Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC17.02■□□□□ 0.32
MKS1Q9NXB0 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC17.02■□□□□ 0.32
MKS1Q9NXB0 TMEM191A-211ENST00000637163 1067 ntBASIC17.02■□□□□ 0.32
MKS1Q9NXB0 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
MKS1Q9NXB0 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC17.02■□□□□ 0.32
MKS1Q9NXB0 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC17.02■□□□□ 0.31
MKS1Q9NXB0 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
MKS1Q9NXB0 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
MKS1Q9NXB0 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
MKS1Q9NXB0 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.31
MKS1Q9NXB0 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
MKS1Q9NXB0 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
MKS1Q9NXB0 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
MKS1Q9NXB0 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
MKS1Q9NXB0 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
MKS1Q9NXB0 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
MKS1Q9NXB0 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 AC112907.2-201ENST00000448639 330 ntBASIC17.01■□□□□ 0.31
MKS1Q9NXB0 MEG3-211ENST00000452514 461 ntTSL 3 BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC17.01■□□□□ 0.31
MKS1Q9NXB0 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC17■□□□□ 0.31
MKS1Q9NXB0 AC132938.5-201ENST00000624980 1813 ntBASIC17■□□□□ 0.31
MKS1Q9NXB0 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC17■□□□□ 0.31
MKS1Q9NXB0 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC17■□□□□ 0.31
MKS1Q9NXB0 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MKS1Q9NXB0 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MKS1Q9NXB0 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MKS1Q9NXB0 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC17■□□□□ 0.31
MKS1Q9NXB0 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
MKS1Q9NXB0 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
MKS1Q9NXB0 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC17■□□□□ 0.31
MKS1Q9NXB0 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC17■□□□□ 0.31
MKS1Q9NXB0 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
MKS1Q9NXB0 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MKS1Q9NXB0 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
MKS1Q9NXB0 AC113347.1-201ENST00000413321 391 ntBASIC17■□□□□ 0.31
MKS1Q9NXB0 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC17■□□□□ 0.31
MKS1Q9NXB0 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC17■□□□□ 0.31
MKS1Q9NXB0 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC17■□□□□ 0.31
MKS1Q9NXB0 CD320-202ENST00000537716 1119 ntTSL 2 BASIC17■□□□□ 0.31
MKS1Q9NXB0 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
MKS1Q9NXB0 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
MKS1Q9NXB0 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
MKS1Q9NXB0 AC073912.3-201ENST00000624414 853 ntBASIC17■□□□□ 0.31
MKS1Q9NXB0 AGK-211ENST00000629555 2765 ntTSL 5 BASIC17■□□□□ 0.31
MKS1Q9NXB0 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC17■□□□□ 0.31
MKS1Q9NXB0 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MKS1Q9NXB0 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
MKS1Q9NXB0 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
MKS1Q9NXB0 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC17■□□□□ 0.31
MKS1Q9NXB0 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC17■□□□□ 0.31
MKS1Q9NXB0 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MKS1Q9NXB0 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC17■□□□□ 0.31
MKS1Q9NXB0 LINC00895-201ENST00000629028 1637 ntBASIC16.99■□□□□ 0.31
MKS1Q9NXB0 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MKS1Q9NXB0 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16.99■□□□□ 0.31
MKS1Q9NXB0 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC16.99■□□□□ 0.31
MKS1Q9NXB0 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
MKS1Q9NXB0 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms