Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC17.12■□□□□ 0.33
TRIM39Q9HCM9 AL139424.1-201ENST00000607572 797 ntBASIC17.12■□□□□ 0.33
TRIM39Q9HCM9 ABBA01031661.1-201ENST00000634362 1253 ntBASIC17.12■□□□□ 0.33
TRIM39Q9HCM9 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM39Q9HCM9 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM39Q9HCM9 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM39Q9HCM9 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM39Q9HCM9 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM39Q9HCM9 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM39Q9HCM9 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.12■□□□□ 0.33
TRIM39Q9HCM9 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.12■□□□□ 0.33
TRIM39Q9HCM9 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM39Q9HCM9 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.12■□□□□ 0.33
TRIM39Q9HCM9 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM39Q9HCM9 AC016396.2-201ENST00000562575 1417 ntBASIC17.12■□□□□ 0.33
TRIM39Q9HCM9 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC17.12■□□□□ 0.33
TRIM39Q9HCM9 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM39Q9HCM9 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM39Q9HCM9 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
TRIM39Q9HCM9 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM39Q9HCM9 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM39Q9HCM9 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM39Q9HCM9 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
TRIM39Q9HCM9 AC008894.3-201ENST00000624324 3103 ntBASIC17.11■□□□□ 0.33
TRIM39Q9HCM9 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM39Q9HCM9 TNRC18P3-201ENST00000441896 2691 ntBASIC17.11■□□□□ 0.33
TRIM39Q9HCM9 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM39Q9HCM9 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM39Q9HCM9 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC17.11■□□□□ 0.33
TRIM39Q9HCM9 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC17.11■□□□□ 0.33
TRIM39Q9HCM9 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC17.11■□□□□ 0.33
TRIM39Q9HCM9 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC17.11■□□□□ 0.33
TRIM39Q9HCM9 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.11■□□□□ 0.33
TRIM39Q9HCM9 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC17.11■□□□□ 0.33
TRIM39Q9HCM9 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC17.11■□□□□ 0.33
TRIM39Q9HCM9 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
TRIM39Q9HCM9 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM39Q9HCM9 AL353135.1-201ENST00000606729 504 ntBASIC17.11■□□□□ 0.33
TRIM39Q9HCM9 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC17.11■□□□□ 0.33
TRIM39Q9HCM9 BX640515.1-201ENST00000617215 977 ntBASIC17.11■□□□□ 0.33
TRIM39Q9HCM9 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC17.11■□□□□ 0.33
TRIM39Q9HCM9 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM39Q9HCM9 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM39Q9HCM9 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM39Q9HCM9 AC243591.1-201ENST00000452967 1364 ntBASIC17.11■□□□□ 0.33
TRIM39Q9HCM9 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM39Q9HCM9 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
TRIM39Q9HCM9 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.11■□□□□ 0.33
TRIM39Q9HCM9 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC17.11■□□□□ 0.33
TRIM39Q9HCM9 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM39Q9HCM9 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM39Q9HCM9 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM39Q9HCM9 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM39Q9HCM9 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM39Q9HCM9 LINC00896-202ENST00000609602 2128 ntBASIC17.11■□□□□ 0.33
TRIM39Q9HCM9 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
TRIM39Q9HCM9 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM39Q9HCM9 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM39Q9HCM9 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM39Q9HCM9 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC17.1■□□□□ 0.33
TRIM39Q9HCM9 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM39Q9HCM9 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM39Q9HCM9 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM39Q9HCM9 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
TRIM39Q9HCM9 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM39Q9HCM9 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC17.1■□□□□ 0.33
TRIM39Q9HCM9 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
TRIM39Q9HCM9 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC17.1■□□□□ 0.33
TRIM39Q9HCM9 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC17.1■□□□□ 0.33
TRIM39Q9HCM9 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC17.1■□□□□ 0.33
TRIM39Q9HCM9 AC073621.1-201ENST00000392730 636 ntBASIC17.1■□□□□ 0.33
TRIM39Q9HCM9 AL590627.1-203ENST00000421194 1026 ntBASIC17.1■□□□□ 0.33
TRIM39Q9HCM9 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC17.1■□□□□ 0.33
TRIM39Q9HCM9 ETFA-208ENST00000559602 792 ntTSL 3 BASIC17.1■□□□□ 0.33
TRIM39Q9HCM9 MIR1199-201ENST00000621445 119 ntBASIC17.1■□□□□ 0.33
TRIM39Q9HCM9 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC17.1■□□□□ 0.33
TRIM39Q9HCM9 PGM5P2-202ENST00000637225 1043 ntBASIC17.1■□□□□ 0.33
TRIM39Q9HCM9 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM39Q9HCM9 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM39Q9HCM9 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
TRIM39Q9HCM9 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
TRIM39Q9HCM9 TPR-209ENST00000613151 2478 ntTSL 5 BASIC17.1■□□□□ 0.33
TRIM39Q9HCM9 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM39Q9HCM9 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
TRIM39Q9HCM9 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM39Q9HCM9 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC17.1■□□□□ 0.33
TRIM39Q9HCM9 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC17.1■□□□□ 0.33
TRIM39Q9HCM9 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC17.1■□□□□ 0.33
TRIM39Q9HCM9 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC17.1■□□□□ 0.33
TRIM39Q9HCM9 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM39Q9HCM9 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
TRIM39Q9HCM9 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM39Q9HCM9 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM39Q9HCM9 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
TRIM39Q9HCM9 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
TRIM39Q9HCM9 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM39Q9HCM9 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC17.09■□□□□ 0.33
TRIM39Q9HCM9 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM39Q9HCM9 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC17.09■□□□□ 0.33
TRIM39Q9HCM9 AC092910.1-201ENST00000482027 1129 ntBASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms