Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PCDH9Q9HC56 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.82■□□□□ 0.44
PCDH9Q9HC56 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PCDH9Q9HC56 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC17.82■□□□□ 0.44
PCDH9Q9HC56 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
PCDH9Q9HC56 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
PCDH9Q9HC56 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PCDH9Q9HC56 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
PCDH9Q9HC56 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PCDH9Q9HC56 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
PCDH9Q9HC56 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.82■□□□□ 0.44
PCDH9Q9HC56 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
PCDH9Q9HC56 RCN1P2-201ENST00000398357 915 ntBASIC17.82■□□□□ 0.44
PCDH9Q9HC56 NUS1P2-201ENST00000417358 873 ntBASIC17.82■□□□□ 0.44
PCDH9Q9HC56 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC17.82■□□□□ 0.44
PCDH9Q9HC56 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
PCDH9Q9HC56 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
PCDH9Q9HC56 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC17.82■□□□□ 0.44
PCDH9Q9HC56 FOSL1P1-201ENST00000511041 816 ntBASIC17.82■□□□□ 0.44
PCDH9Q9HC56 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC17.82■□□□□ 0.44
PCDH9Q9HC56 AC114341.1-201ENST00000618070 349 ntBASIC17.82■□□□□ 0.44
PCDH9Q9HC56 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.82■□□□□ 0.44
PCDH9Q9HC56 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PCDH9Q9HC56 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PCDH9Q9HC56 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
PCDH9Q9HC56 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PCDH9Q9HC56 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC17.82■□□□□ 0.44
PCDH9Q9HC56 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC17.82■□□□□ 0.44
PCDH9Q9HC56 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
PCDH9Q9HC56 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC17.82■□□□□ 0.44
PCDH9Q9HC56 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PCDH9Q9HC56 KRT8P10-201ENST00000450021 1447 ntBASIC17.81■□□□□ 0.44
PCDH9Q9HC56 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
PCDH9Q9HC56 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC17.81■□□□□ 0.44
PCDH9Q9HC56 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDH9Q9HC56 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
PCDH9Q9HC56 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PCDH9Q9HC56 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PCDH9Q9HC56 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDH9Q9HC56 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDH9Q9HC56 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDH9Q9HC56 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDH9Q9HC56 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDH9Q9HC56 INTS4P1-201ENST00000438455 1935 ntBASIC17.81■□□□□ 0.44
PCDH9Q9HC56 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PCDH9Q9HC56 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PCDH9Q9HC56 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
PCDH9Q9HC56 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC17.81■□□□□ 0.44
PCDH9Q9HC56 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC17.81■□□□□ 0.44
PCDH9Q9HC56 FICD-205ENST00000552758 603 ntTSL 2 BASIC17.81■□□□□ 0.44
PCDH9Q9HC56 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC17.81■□□□□ 0.44
PCDH9Q9HC56 PRELID1P1-202ENST00000567272 903 ntBASIC17.81■□□□□ 0.44
PCDH9Q9HC56 PRR29-207ENST00000580752 458 ntTSL 3 BASIC17.81■□□□□ 0.44
PCDH9Q9HC56 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PCDH9Q9HC56 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDH9Q9HC56 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDH9Q9HC56 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC17.81■□□□□ 0.44
PCDH9Q9HC56 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC17.81■□□□□ 0.44
PCDH9Q9HC56 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDH9Q9HC56 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PCDH9Q9HC56 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDH9Q9HC56 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDH9Q9HC56 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDH9Q9HC56 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.81■□□□□ 0.44
PCDH9Q9HC56 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
PCDH9Q9HC56 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.81■□□□□ 0.44
PCDH9Q9HC56 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC17.8■□□□□ 0.44
PCDH9Q9HC56 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
PCDH9Q9HC56 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PCDH9Q9HC56 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDH9Q9HC56 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PCDH9Q9HC56 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC17.8■□□□□ 0.44
PCDH9Q9HC56 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC17.8■□□□□ 0.44
PCDH9Q9HC56 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC17.8■□□□□ 0.44
PCDH9Q9HC56 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PCDH9Q9HC56 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PCDH9Q9HC56 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDH9Q9HC56 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
PCDH9Q9HC56 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC17.8■□□□□ 0.44
PCDH9Q9HC56 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PCDH9Q9HC56 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC17.8■□□□□ 0.44
PCDH9Q9HC56 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC17.8■□□□□ 0.44
PCDH9Q9HC56 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC17.8■□□□□ 0.44
PCDH9Q9HC56 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDH9Q9HC56 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDH9Q9HC56 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDH9Q9HC56 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC17.8■□□□□ 0.44
PCDH9Q9HC56 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PCDH9Q9HC56 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDH9Q9HC56 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
PCDH9Q9HC56 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC17.8■□□□□ 0.44
PCDH9Q9HC56 AL353593.2-201ENST00000602529 1483 ntBASIC17.8■□□□□ 0.44
PCDH9Q9HC56 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
PCDH9Q9HC56 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC17.8■□□□□ 0.44
PCDH9Q9HC56 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PCDH9Q9HC56 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDH9Q9HC56 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC17.8■□□□□ 0.44
PCDH9Q9HC56 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC17.8■□□□□ 0.44
PCDH9Q9HC56 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.8■□□□□ 0.44
PCDH9Q9HC56 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms