Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM4Q9C037 HOXB1-202ENST00000577092 1414 ntBASIC17.31■□□□□ 0.36
TRIM4Q9C037 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM4Q9C037 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM4Q9C037 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC17.31■□□□□ 0.36
TRIM4Q9C037 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM4Q9C037 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM4Q9C037 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM4Q9C037 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM4Q9C037 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC17.31■□□□□ 0.36
TRIM4Q9C037 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM4Q9C037 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC17.31■□□□□ 0.36
TRIM4Q9C037 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM4Q9C037 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM4Q9C037 ILF2-202ENST00000368681 726 ntTSL 2 BASIC17.31■□□□□ 0.36
TRIM4Q9C037 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM4Q9C037 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC17.31■□□□□ 0.36
TRIM4Q9C037 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC17.31■□□□□ 0.36
TRIM4Q9C037 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC17.31■□□□□ 0.36
TRIM4Q9C037 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC17.31■□□□□ 0.36
TRIM4Q9C037 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC17.31■□□□□ 0.36
TRIM4Q9C037 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC17.31■□□□□ 0.36
TRIM4Q9C037 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM4Q9C037 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC17.31■□□□□ 0.36
TRIM4Q9C037 NAT14-202ENST00000587400 416 ntTSL 5 BASIC17.31■□□□□ 0.36
TRIM4Q9C037 BX640515.1-201ENST00000617215 977 ntBASIC17.31■□□□□ 0.36
TRIM4Q9C037 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM4Q9C037 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM4Q9C037 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM4Q9C037 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM4Q9C037 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.31■□□□□ 0.36
TRIM4Q9C037 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
TRIM4Q9C037 AGK-211ENST00000629555 2765 ntTSL 5 BASIC17.31■□□□□ 0.36
TRIM4Q9C037 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
TRIM4Q9C037 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
TRIM4Q9C037 CYP51A1P1-201ENST00000492267 1507 ntBASIC17.31■□□□□ 0.36
TRIM4Q9C037 AL163051.1-201ENST00000569214 1512 ntBASIC17.31■□□□□ 0.36
TRIM4Q9C037 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.31■□□□□ 0.36
TRIM4Q9C037 AP001094.4-201ENST00000579008 2176 ntBASIC17.3■□□□□ 0.36
TRIM4Q9C037 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM4Q9C037 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM4Q9C037 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM4Q9C037 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC17.3■□□□□ 0.36
TRIM4Q9C037 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM4Q9C037 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM4Q9C037 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM4Q9C037 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM4Q9C037 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC17.3■□□□□ 0.36
TRIM4Q9C037 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC17.3■□□□□ 0.36
TRIM4Q9C037 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM4Q9C037 HLA-A-201ENST00000376802 1334 ntBASIC17.3■□□□□ 0.36
TRIM4Q9C037 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM4Q9C037 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM4Q9C037 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
TRIM4Q9C037 GAD2-202ENST00000376248 680 ntTSL 5 BASIC17.3■□□□□ 0.36
TRIM4Q9C037 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM4Q9C037 MIR574-201ENST00000385209 96 ntBASIC17.3■□□□□ 0.36
TRIM4Q9C037 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM4Q9C037 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
TRIM4Q9C037 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC17.3■□□□□ 0.36
TRIM4Q9C037 KRT18P31-201ENST00000506277 1292 ntBASIC17.3■□□□□ 0.36
TRIM4Q9C037 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM4Q9C037 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC17.3■□□□□ 0.36
TRIM4Q9C037 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM4Q9C037 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.3■□□□□ 0.36
TRIM4Q9C037 PP12613-201ENST00000424958 2230 ntBASIC17.3■□□□□ 0.36
TRIM4Q9C037 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
TRIM4Q9C037 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM4Q9C037 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM4Q9C037 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
TRIM4Q9C037 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM4Q9C037 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM4Q9C037 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
TRIM4Q9C037 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC17.3■□□□□ 0.36
TRIM4Q9C037 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC17.3■□□□□ 0.36
TRIM4Q9C037 REXO1L9P-201ENST00000604264 2108 ntBASIC17.3■□□□□ 0.36
TRIM4Q9C037 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC17.3■□□□□ 0.36
TRIM4Q9C037 PHGDH-209ENST00000641074 1780 ntBASIC17.3■□□□□ 0.36
TRIM4Q9C037 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM4Q9C037 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
TRIM4Q9C037 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC17.3■□□□□ 0.36
TRIM4Q9C037 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC17.3■□□□□ 0.36
TRIM4Q9C037 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC17.3■□□□□ 0.36
TRIM4Q9C037 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.3■□□□□ 0.36
TRIM4Q9C037 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM4Q9C037 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM4Q9C037 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.29■□□□□ 0.36
TRIM4Q9C037 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM4Q9C037 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM4Q9C037 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM4Q9C037 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM4Q9C037 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM4Q9C037 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
TRIM4Q9C037 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
TRIM4Q9C037 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM4Q9C037 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC17.29■□□□□ 0.36
TRIM4Q9C037 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC17.29■□□□□ 0.36
TRIM4Q9C037 HMGN1P19-201ENST00000436976 333 ntBASIC17.29■□□□□ 0.36
TRIM4Q9C037 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC17.29■□□□□ 0.36
TRIM4Q9C037 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms