Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC20.34■□□□□ 0.85
NKX2-3Q8TAU0 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
NKX2-3Q8TAU0 AC002310.6-201ENST00000624451 1377 ntBASIC20.34■□□□□ 0.85
NKX2-3Q8TAU0 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NKX2-3Q8TAU0 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NKX2-3Q8TAU0 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC20.34■□□□□ 0.85
NKX2-3Q8TAU0 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC20.34■□□□□ 0.85
NKX2-3Q8TAU0 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
NKX2-3Q8TAU0 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
NKX2-3Q8TAU0 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NKX2-3Q8TAU0 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NKX2-3Q8TAU0 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
NKX2-3Q8TAU0 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
NKX2-3Q8TAU0 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
NKX2-3Q8TAU0 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NKX2-3Q8TAU0 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
NKX2-3Q8TAU0 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC20.34■□□□□ 0.85
NKX2-3Q8TAU0 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC20.34■□□□□ 0.85
NKX2-3Q8TAU0 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
NKX2-3Q8TAU0 SLC4A1APP2-201ENST00000424054 1259 ntBASIC20.34■□□□□ 0.85
NKX2-3Q8TAU0 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
NKX2-3Q8TAU0 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC20.34■□□□□ 0.85
NKX2-3Q8TAU0 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC20.34■□□□□ 0.85
NKX2-3Q8TAU0 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC20.34■□□□□ 0.85
NKX2-3Q8TAU0 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
NKX2-3Q8TAU0 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC20.34■□□□□ 0.85
NKX2-3Q8TAU0 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC20.34■□□□□ 0.85
NKX2-3Q8TAU0 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
NKX2-3Q8TAU0 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC20.34■□□□□ 0.85
NKX2-3Q8TAU0 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
NKX2-3Q8TAU0 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
NKX2-3Q8TAU0 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
NKX2-3Q8TAU0 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
NKX2-3Q8TAU0 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC20.34■□□□□ 0.85
NKX2-3Q8TAU0 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NKX2-3Q8TAU0 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
NKX2-3Q8TAU0 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NKX2-3Q8TAU0 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC20.34■□□□□ 0.85
NKX2-3Q8TAU0 AP001094.4-201ENST00000579008 2176 ntBASIC20.34■□□□□ 0.85
NKX2-3Q8TAU0 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
NKX2-3Q8TAU0 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
NKX2-3Q8TAU0 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
NKX2-3Q8TAU0 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC20.33■□□□□ 0.85
NKX2-3Q8TAU0 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC20.33■□□□□ 0.85
NKX2-3Q8TAU0 HNRNPRP1-201ENST00000453465 1695 ntBASIC20.33■□□□□ 0.85
NKX2-3Q8TAU0 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
NKX2-3Q8TAU0 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC20.33■□□□□ 0.85
NKX2-3Q8TAU0 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
NKX2-3Q8TAU0 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
NKX2-3Q8TAU0 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC20.33■□□□□ 0.85
NKX2-3Q8TAU0 LHX6-205ENST00000464484 666 ntTSL 2 BASIC20.33■□□□□ 0.85
NKX2-3Q8TAU0 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC20.33■□□□□ 0.85
NKX2-3Q8TAU0 OR7E47P-204ENST00000575924 449 ntBASIC20.33■□□□□ 0.85
NKX2-3Q8TAU0 AC005593.1-201ENST00000624894 515 ntBASIC20.33■□□□□ 0.85
NKX2-3Q8TAU0 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
NKX2-3Q8TAU0 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC20.33■□□□□ 0.84
NKX2-3Q8TAU0 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC20.33■□□□□ 0.84
NKX2-3Q8TAU0 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
NKX2-3Q8TAU0 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
NKX2-3Q8TAU0 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
NKX2-3Q8TAU0 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
NKX2-3Q8TAU0 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
NKX2-3Q8TAU0 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
NKX2-3Q8TAU0 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
NKX2-3Q8TAU0 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC20.32■□□□□ 0.84
NKX2-3Q8TAU0 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC20.32■□□□□ 0.84
NKX2-3Q8TAU0 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC20.32■□□□□ 0.84
NKX2-3Q8TAU0 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC20.32■□□□□ 0.84
NKX2-3Q8TAU0 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
NKX2-3Q8TAU0 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NKX2-3Q8TAU0 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
NKX2-3Q8TAU0 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
NKX2-3Q8TAU0 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NKX2-3Q8TAU0 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
NKX2-3Q8TAU0 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC20.32■□□□□ 0.84
NKX2-3Q8TAU0 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC20.32■□□□□ 0.84
NKX2-3Q8TAU0 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC20.32■□□□□ 0.84
NKX2-3Q8TAU0 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
NKX2-3Q8TAU0 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
NKX2-3Q8TAU0 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
NKX2-3Q8TAU0 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
NKX2-3Q8TAU0 CIPC-205ENST00000555437 566 ntTSL 3 BASIC20.32■□□□□ 0.84
NKX2-3Q8TAU0 SPCS2P1-201ENST00000561636 679 ntBASIC20.32■□□□□ 0.84
NKX2-3Q8TAU0 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC20.32■□□□□ 0.84
NKX2-3Q8TAU0 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
NKX2-3Q8TAU0 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
NKX2-3Q8TAU0 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NKX2-3Q8TAU0 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
NKX2-3Q8TAU0 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
NKX2-3Q8TAU0 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
NKX2-3Q8TAU0 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
NKX2-3Q8TAU0 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
NKX2-3Q8TAU0 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NKX2-3Q8TAU0 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NKX2-3Q8TAU0 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NKX2-3Q8TAU0 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.31■□□□□ 0.84
NKX2-3Q8TAU0 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC20.31■□□□□ 0.84
NKX2-3Q8TAU0 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NKX2-3Q8TAU0 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
NKX2-3Q8TAU0 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms