Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC16.22■□□□□ 0.19
CLIP4Q8N3C7 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CLIP4Q8N3C7 GUSBP12-201ENST00000513727 720 ntBASIC16.22■□□□□ 0.19
CLIP4Q8N3C7 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
CLIP4Q8N3C7 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC16.22■□□□□ 0.19
CLIP4Q8N3C7 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CLIP4Q8N3C7 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
CLIP4Q8N3C7 AC124864.1-201ENST00000623408 392 ntBASIC16.22■□□□□ 0.19
CLIP4Q8N3C7 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
CLIP4Q8N3C7 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
CLIP4Q8N3C7 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLIP4Q8N3C7 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.22■□□□□ 0.19
CLIP4Q8N3C7 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.22■□□□□ 0.19
CLIP4Q8N3C7 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.22■□□□□ 0.19
CLIP4Q8N3C7 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLIP4Q8N3C7 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.22■□□□□ 0.19
CLIP4Q8N3C7 AL121761.2-201ENST00000598007 1648 ntBASIC16.22■□□□□ 0.19
CLIP4Q8N3C7 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC16.22■□□□□ 0.19
CLIP4Q8N3C7 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CLIP4Q8N3C7 MED25-212ENST00000618715 1467 ntTSL 5 BASIC16.22■□□□□ 0.19
CLIP4Q8N3C7 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLIP4Q8N3C7 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC16.22■□□□□ 0.19
CLIP4Q8N3C7 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC16.22■□□□□ 0.19
CLIP4Q8N3C7 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLIP4Q8N3C7 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC16.21■□□□□ 0.19
CLIP4Q8N3C7 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLIP4Q8N3C7 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLIP4Q8N3C7 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CLIP4Q8N3C7 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CLIP4Q8N3C7 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLIP4Q8N3C7 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.21■□□□□ 0.19
CLIP4Q8N3C7 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLIP4Q8N3C7 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLIP4Q8N3C7 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLIP4Q8N3C7 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLIP4Q8N3C7 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLIP4Q8N3C7 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.21■□□□□ 0.19
CLIP4Q8N3C7 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLIP4Q8N3C7 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
CLIP4Q8N3C7 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLIP4Q8N3C7 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLIP4Q8N3C7 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.21■□□□□ 0.19
CLIP4Q8N3C7 PC-208ENST00000529047 1607 ntTSL 3 BASIC16.21■□□□□ 0.19
CLIP4Q8N3C7 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLIP4Q8N3C7 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLIP4Q8N3C7 DAP-202ENST00000432074 1048 ntTSL 2 BASIC16.21■□□□□ 0.19
CLIP4Q8N3C7 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC16.21■□□□□ 0.19
CLIP4Q8N3C7 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC16.21■□□□□ 0.19
CLIP4Q8N3C7 KRT18P21-201ENST00000515767 1272 ntBASIC16.21■□□□□ 0.19
CLIP4Q8N3C7 AL136038.3-201ENST00000561909 1096 ntBASIC16.21■□□□□ 0.19
CLIP4Q8N3C7 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC16.21■□□□□ 0.19
CLIP4Q8N3C7 AC011498.5-201ENST00000592027 486 ntBASIC16.21■□□□□ 0.19
CLIP4Q8N3C7 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
CLIP4Q8N3C7 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.21■□□□□ 0.19
CLIP4Q8N3C7 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLIP4Q8N3C7 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.21■□□□□ 0.19
CLIP4Q8N3C7 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC16.21■□□□□ 0.19
CLIP4Q8N3C7 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC16.21■□□□□ 0.19
CLIP4Q8N3C7 AL136379.1-201ENST00000623471 2642 ntBASIC16.21■□□□□ 0.19
CLIP4Q8N3C7 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CLIP4Q8N3C7 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
CLIP4Q8N3C7 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
CLIP4Q8N3C7 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
CLIP4Q8N3C7 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLIP4Q8N3C7 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CLIP4Q8N3C7 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLIP4Q8N3C7 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CLIP4Q8N3C7 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CLIP4Q8N3C7 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.2■□□□□ 0.18
CLIP4Q8N3C7 LINC02199-201ENST00000506655 2702 ntBASIC16.2■□□□□ 0.18
CLIP4Q8N3C7 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLIP4Q8N3C7 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLIP4Q8N3C7 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLIP4Q8N3C7 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
CLIP4Q8N3C7 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLIP4Q8N3C7 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLIP4Q8N3C7 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLIP4Q8N3C7 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLIP4Q8N3C7 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLIP4Q8N3C7 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC16.2■□□□□ 0.18
CLIP4Q8N3C7 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLIP4Q8N3C7 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.2■□□□□ 0.18
CLIP4Q8N3C7 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLIP4Q8N3C7 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLIP4Q8N3C7 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLIP4Q8N3C7 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC16.2■□□□□ 0.18
CLIP4Q8N3C7 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CLIP4Q8N3C7 AL845331.1-201ENST00000424978 1190 ntBASIC16.2■□□□□ 0.18
CLIP4Q8N3C7 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC16.2■□□□□ 0.18
CLIP4Q8N3C7 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
CLIP4Q8N3C7 CNP-204ENST00000472031 1019 ntTSL 2 BASIC16.2■□□□□ 0.18
CLIP4Q8N3C7 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CLIP4Q8N3C7 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLIP4Q8N3C7 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CLIP4Q8N3C7 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CLIP4Q8N3C7 AL592071.1-201ENST00000611956 408 ntBASIC16.2■□□□□ 0.18
CLIP4Q8N3C7 VPS72-207ENST00000640458 689 ntTSL 5 BASIC16.2■□□□□ 0.18
CLIP4Q8N3C7 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLIP4Q8N3C7 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CLIP4Q8N3C7 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 73.9 ms