Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC16.03■□□□□ 0.16
BEST3Q8N1M1 AC139530.3-201ENST00000620344 690 ntBASIC16.03■□□□□ 0.16
BEST3Q8N1M1 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
BEST3Q8N1M1 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
BEST3Q8N1M1 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
BEST3Q8N1M1 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
BEST3Q8N1M1 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
BEST3Q8N1M1 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
BEST3Q8N1M1 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
BEST3Q8N1M1 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
BEST3Q8N1M1 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
BEST3Q8N1M1 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
BEST3Q8N1M1 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
BEST3Q8N1M1 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC16.03■□□□□ 0.16
BEST3Q8N1M1 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
BEST3Q8N1M1 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
BEST3Q8N1M1 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
BEST3Q8N1M1 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
BEST3Q8N1M1 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
BEST3Q8N1M1 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
BEST3Q8N1M1 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
BEST3Q8N1M1 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
BEST3Q8N1M1 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
BEST3Q8N1M1 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
BEST3Q8N1M1 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC16.02■□□□□ 0.16
BEST3Q8N1M1 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC16.02■□□□□ 0.16
BEST3Q8N1M1 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
BEST3Q8N1M1 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC16.02■□□□□ 0.16
BEST3Q8N1M1 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC16.02■□□□□ 0.16
BEST3Q8N1M1 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
BEST3Q8N1M1 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
BEST3Q8N1M1 GATB-213ENST00000515812 1893 ntTSL 5 BASIC16.02■□□□□ 0.16
BEST3Q8N1M1 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
BEST3Q8N1M1 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
BEST3Q8N1M1 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
BEST3Q8N1M1 BEX3-201ENST00000361298 921 ntTSL 2 BASIC16.02■□□□□ 0.16
BEST3Q8N1M1 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC16.02■□□□□ 0.16
BEST3Q8N1M1 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
BEST3Q8N1M1 MIR1233-2-201ENST00000408138 82 ntBASIC16.02■□□□□ 0.16
BEST3Q8N1M1 MIR1233-1-201ENST00000408722 82 ntBASIC16.02■□□□□ 0.16
BEST3Q8N1M1 RPS15P9-201ENST00000494093 319 ntBASIC16.02■□□□□ 0.16
BEST3Q8N1M1 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
BEST3Q8N1M1 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC16.02■□□□□ 0.16
BEST3Q8N1M1 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC16.02■□□□□ 0.16
BEST3Q8N1M1 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC16.02■□□□□ 0.16
BEST3Q8N1M1 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC16.02■□□□□ 0.16
BEST3Q8N1M1 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC16.02■□□□□ 0.16
BEST3Q8N1M1 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC16.02■□□□□ 0.16
BEST3Q8N1M1 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
BEST3Q8N1M1 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC16.02■□□□□ 0.16
BEST3Q8N1M1 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC16.02■□□□□ 0.16
BEST3Q8N1M1 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
BEST3Q8N1M1 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC16.02■□□□□ 0.15
BEST3Q8N1M1 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
BEST3Q8N1M1 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC16.02■□□□□ 0.15
BEST3Q8N1M1 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
BEST3Q8N1M1 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
BEST3Q8N1M1 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC16.02■□□□□ 0.15
BEST3Q8N1M1 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
BEST3Q8N1M1 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
BEST3Q8N1M1 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
BEST3Q8N1M1 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
BEST3Q8N1M1 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
BEST3Q8N1M1 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
BEST3Q8N1M1 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC16.02■□□□□ 0.15
BEST3Q8N1M1 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC16.02■□□□□ 0.15
BEST3Q8N1M1 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC16.01■□□□□ 0.15
BEST3Q8N1M1 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC16.01■□□□□ 0.15
BEST3Q8N1M1 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC16.01■□□□□ 0.15
BEST3Q8N1M1 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
BEST3Q8N1M1 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
BEST3Q8N1M1 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
BEST3Q8N1M1 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
BEST3Q8N1M1 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
BEST3Q8N1M1 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
BEST3Q8N1M1 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
BEST3Q8N1M1 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC16.01■□□□□ 0.15
BEST3Q8N1M1 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
BEST3Q8N1M1 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
BEST3Q8N1M1 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC16.01■□□□□ 0.15
BEST3Q8N1M1 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC16.01■□□□□ 0.15
BEST3Q8N1M1 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC16.01■□□□□ 0.15
BEST3Q8N1M1 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC16.01■□□□□ 0.15
BEST3Q8N1M1 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC16.01■□□□□ 0.15
BEST3Q8N1M1 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC16.01■□□□□ 0.15
BEST3Q8N1M1 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC16.01■□□□□ 0.15
BEST3Q8N1M1 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC16.01■□□□□ 0.15
BEST3Q8N1M1 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC16.01■□□□□ 0.15
BEST3Q8N1M1 AC064836.3-201ENST00000607928 673 ntBASIC16.01■□□□□ 0.15
BEST3Q8N1M1 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
BEST3Q8N1M1 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC16.01■□□□□ 0.15
BEST3Q8N1M1 REXO1L11P-201ENST00000620964 1927 ntBASIC16.01■□□□□ 0.15
BEST3Q8N1M1 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
BEST3Q8N1M1 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC16.01■□□□□ 0.15
BEST3Q8N1M1 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
BEST3Q8N1M1 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
BEST3Q8N1M1 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
BEST3Q8N1M1 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
BEST3Q8N1M1 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
BEST3Q8N1M1 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 66.7 ms