Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
RFX4Q33E94 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC16.08■□□□□ 0.16
RFX4Q33E94 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC16.08■□□□□ 0.16
RFX4Q33E94 AL138966.2-201ENST00000621997 464 ntBASIC16.08■□□□□ 0.16
RFX4Q33E94 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
RFX4Q33E94 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
RFX4Q33E94 AC008741.2-201ENST00000612792 3115 ntBASIC16.08■□□□□ 0.16
RFX4Q33E94 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
RFX4Q33E94 CES3-203ENST00000543856 3178 ntTSL 2 BASIC16.08■□□□□ 0.16
RFX4Q33E94 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
RFX4Q33E94 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
RFX4Q33E94 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.08■□□□□ 0.16
RFX4Q33E94 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
RFX4Q33E94 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.08■□□□□ 0.16
RFX4Q33E94 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC16.08■□□□□ 0.16
RFX4Q33E94 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC16.08■□□□□ 0.16
RFX4Q33E94 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
RFX4Q33E94 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
RFX4Q33E94 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
RFX4Q33E94 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
RFX4Q33E94 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC16.07■□□□□ 0.16
RFX4Q33E94 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
RFX4Q33E94 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFX4Q33E94 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFX4Q33E94 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFX4Q33E94 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
RFX4Q33E94 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
RFX4Q33E94 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFX4Q33E94 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC16.07■□□□□ 0.16
RFX4Q33E94 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC16.07■□□□□ 0.16
RFX4Q33E94 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC16.07■□□□□ 0.16
RFX4Q33E94 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC16.07■□□□□ 0.16
RFX4Q33E94 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFX4Q33E94 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFX4Q33E94 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFX4Q33E94 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFX4Q33E94 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
RFX4Q33E94 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC16.07■□□□□ 0.16
RFX4Q33E94 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
RFX4Q33E94 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFX4Q33E94 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC16.07■□□□□ 0.16
RFX4Q33E94 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC16.07■□□□□ 0.16
RFX4Q33E94 TK1-205ENST00000590862 642 ntTSL 3 BASIC16.07■□□□□ 0.16
RFX4Q33E94 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
RFX4Q33E94 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
RFX4Q33E94 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
RFX4Q33E94 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC16.07■□□□□ 0.16
RFX4Q33E94 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC16.07■□□□□ 0.16
RFX4Q33E94 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC16.07■□□□□ 0.16
RFX4Q33E94 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC16.07■□□□□ 0.16
RFX4Q33E94 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
RFX4Q33E94 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
RFX4Q33E94 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
RFX4Q33E94 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFX4Q33E94 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
RFX4Q33E94 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
RFX4Q33E94 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC16.07■□□□□ 0.16
RFX4Q33E94 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
RFX4Q33E94 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC16.07■□□□□ 0.16
RFX4Q33E94 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFX4Q33E94 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
RFX4Q33E94 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC16.07■□□□□ 0.16
RFX4Q33E94 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
RFX4Q33E94 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC16.07■□□□□ 0.16
RFX4Q33E94 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFX4Q33E94 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
RFX4Q33E94 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFX4Q33E94 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFX4Q33E94 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
RFX4Q33E94 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFX4Q33E94 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
RFX4Q33E94 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.06■□□□□ 0.16
RFX4Q33E94 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFX4Q33E94 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFX4Q33E94 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC16.06■□□□□ 0.16
RFX4Q33E94 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
RFX4Q33E94 PGR-209ENST00000617858 2816 ntTSL 5 BASIC16.06■□□□□ 0.16
RFX4Q33E94 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC16.06■□□□□ 0.16
RFX4Q33E94 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFX4Q33E94 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RFX4Q33E94 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.06■□□□□ 0.16
RFX4Q33E94 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
RFX4Q33E94 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
RFX4Q33E94 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RFX4Q33E94 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFX4Q33E94 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
RFX4Q33E94 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFX4Q33E94 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
RFX4Q33E94 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFX4Q33E94 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC16.06■□□□□ 0.16
RFX4Q33E94 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RFX4Q33E94 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RFX4Q33E94 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC16.06■□□□□ 0.16
RFX4Q33E94 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC16.06■□□□□ 0.16
RFX4Q33E94 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
RFX4Q33E94 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
RFX4Q33E94 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC16.06■□□□□ 0.16
RFX4Q33E94 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFX4Q33E94 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFX4Q33E94 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 75.9 ms