Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
COL28A1Q2UY09 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
COL28A1Q2UY09 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL28A1Q2UY09 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL28A1Q2UY09 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
COL28A1Q2UY09 BAD-202ENST00000394531 631 ntTSL 3 BASIC16.58■□□□□ 0.24
COL28A1Q2UY09 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
COL28A1Q2UY09 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC16.58■□□□□ 0.24
COL28A1Q2UY09 CBR1-202ENST00000399191 838 ntTSL 3 BASIC16.58■□□□□ 0.24
COL28A1Q2UY09 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
COL28A1Q2UY09 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
COL28A1Q2UY09 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
COL28A1Q2UY09 SMN2-210ENST00000511812 867 ntTSL 2 BASIC16.58■□□□□ 0.24
COL28A1Q2UY09 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
COL28A1Q2UY09 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC16.58■□□□□ 0.24
COL28A1Q2UY09 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC16.58■□□□□ 0.24
COL28A1Q2UY09 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
COL28A1Q2UY09 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC16.58■□□□□ 0.24
COL28A1Q2UY09 YTHDF3-AS1-201ENST00000603538 718 ntBASIC16.58■□□□□ 0.24
COL28A1Q2UY09 MIR6752-201ENST00000618442 71 ntBASIC16.58■□□□□ 0.24
COL28A1Q2UY09 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
COL28A1Q2UY09 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC16.58■□□□□ 0.24
COL28A1Q2UY09 PKD1P1-201ENST00000458669 6805 ntBASIC16.58■□□□□ 0.24
COL28A1Q2UY09 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL28A1Q2UY09 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL28A1Q2UY09 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL28A1Q2UY09 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
COL28A1Q2UY09 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL28A1Q2UY09 AL096828.2-201ENST00000567259 1965 ntBASIC16.58■□□□□ 0.24
COL28A1Q2UY09 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
COL28A1Q2UY09 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC16.58■□□□□ 0.24
COL28A1Q2UY09 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL28A1Q2UY09 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL28A1Q2UY09 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL28A1Q2UY09 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
COL28A1Q2UY09 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL28A1Q2UY09 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC16.57■□□□□ 0.24
COL28A1Q2UY09 OR6D1P-202ENST00000641007 5290 ntBASIC16.57■□□□□ 0.24
COL28A1Q2UY09 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC16.57■□□□□ 0.24
COL28A1Q2UY09 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC16.57■□□□□ 0.24
COL28A1Q2UY09 BCAR1-209ENST00000546196 1340 ntBASIC16.57■□□□□ 0.24
COL28A1Q2UY09 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC16.57■□□□□ 0.24
COL28A1Q2UY09 CD9-202ENST00000382515 1229 ntTSL 5 BASIC16.57■□□□□ 0.24
COL28A1Q2UY09 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC16.57■□□□□ 0.24
COL28A1Q2UY09 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC16.57■□□□□ 0.24
COL28A1Q2UY09 TSPY16P-201ENST00000449843 468 ntBASIC16.57■□□□□ 0.24
COL28A1Q2UY09 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC16.57■□□□□ 0.24
COL28A1Q2UY09 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC16.57■□□□□ 0.24
COL28A1Q2UY09 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL28A1Q2UY09 RN7SL204P-201ENST00000582831 262 ntBASIC16.57■□□□□ 0.24
COL28A1Q2UY09 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL28A1Q2UY09 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC16.57■□□□□ 0.24
COL28A1Q2UY09 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC16.57■□□□□ 0.24
COL28A1Q2UY09 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL28A1Q2UY09 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL28A1Q2UY09 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL28A1Q2UY09 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL28A1Q2UY09 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
COL28A1Q2UY09 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL28A1Q2UY09 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL28A1Q2UY09 REXO1L9P-201ENST00000604264 2108 ntBASIC16.57■□□□□ 0.24
COL28A1Q2UY09 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL28A1Q2UY09 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL28A1Q2UY09 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL28A1Q2UY09 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL28A1Q2UY09 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
COL28A1Q2UY09 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC16.56■□□□□ 0.24
COL28A1Q2UY09 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL28A1Q2UY09 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
COL28A1Q2UY09 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL28A1Q2UY09 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL28A1Q2UY09 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
COL28A1Q2UY09 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL28A1Q2UY09 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
COL28A1Q2UY09 NEK7-201ENST00000367383 586 ntTSL 2 BASIC16.56■□□□□ 0.24
COL28A1Q2UY09 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
COL28A1Q2UY09 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
COL28A1Q2UY09 HNRNPFP1-201ENST00000391730 1133 ntBASIC16.56■□□□□ 0.24
COL28A1Q2UY09 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC16.56■□□□□ 0.24
COL28A1Q2UY09 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC16.56■□□□□ 0.24
COL28A1Q2UY09 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
COL28A1Q2UY09 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC16.56■□□□□ 0.24
COL28A1Q2UY09 AC023141.5-201ENST00000458585 616 ntBASIC16.56■□□□□ 0.24
COL28A1Q2UY09 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC16.56■□□□□ 0.24
COL28A1Q2UY09 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
COL28A1Q2UY09 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC16.56■□□□□ 0.24
COL28A1Q2UY09 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC16.56■□□□□ 0.24
COL28A1Q2UY09 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC16.56■□□□□ 0.24
COL28A1Q2UY09 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC16.56■□□□□ 0.24
COL28A1Q2UY09 CITED2-204ENST00000618718 901 ntTSL 2 BASIC16.56■□□□□ 0.24
COL28A1Q2UY09 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC16.56■□□□□ 0.24
COL28A1Q2UY09 AC004790.2-201ENST00000623588 572 ntBASIC16.56■□□□□ 0.24
COL28A1Q2UY09 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
COL28A1Q2UY09 AC105339.1-204ENST00000636249 355 ntBASIC16.56■□□□□ 0.24
COL28A1Q2UY09 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC16.56■□□□□ 0.24
COL28A1Q2UY09 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL28A1Q2UY09 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL28A1Q2UY09 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC16.56■□□□□ 0.24
COL28A1Q2UY09 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC16.56■□□□□ 0.24
COL28A1Q2UY09 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms