Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC12.26□□□□□ -0.45
PRKDCP78527 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC12.26□□□□□ -0.45
PRKDCP78527 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
PRKDCP78527 KRT8P13-201ENST00000463294 1010 ntBASIC12.26□□□□□ -0.45
PRKDCP78527 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC12.26□□□□□ -0.45
PRKDCP78527 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
PRKDCP78527 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC12.26□□□□□ -0.45
PRKDCP78527 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC12.26□□□□□ -0.45
PRKDCP78527 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC12.26□□□□□ -0.45
PRKDCP78527 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
PRKDCP78527 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
PRKDCP78527 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
PRKDCP78527 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC12.26□□□□□ -0.45
PRKDCP78527 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC12.26□□□□□ -0.45
PRKDCP78527 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC12.26□□□□□ -0.45
PRKDCP78527 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
PRKDCP78527 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
PRKDCP78527 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
PRKDCP78527 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
PRKDCP78527 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC12.26□□□□□ -0.45
PRKDCP78527 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
PRKDCP78527 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
PRKDCP78527 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
PRKDCP78527 BID-204ENST00000399767 2129 ntTSL 2 BASIC12.26□□□□□ -0.45
PRKDCP78527 BRWD1P1-201ENST00000401091 371 ntBASIC12.26□□□□□ -0.45
PRKDCP78527 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC12.26□□□□□ -0.45
PRKDCP78527 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
PRKDCP78527 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC12.26□□□□□ -0.45
PRKDCP78527 MIR8072-201ENST00000614241 80 ntBASIC12.26□□□□□ -0.45
PRKDCP78527 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC12.26□□□□□ -0.45
PRKDCP78527 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC12.26□□□□□ -0.45
PRKDCP78527 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC12.26□□□□□ -0.45
PRKDCP78527 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
PRKDCP78527 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC12.26□□□□□ -0.45
PRKDCP78527 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
PRKDCP78527 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC12.26□□□□□ -0.45
PRKDCP78527 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
PRKDCP78527 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
PRKDCP78527 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC12.26□□□□□ -0.45
PRKDCP78527 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC12.26□□□□□ -0.45
PRKDCP78527 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC12.26□□□□□ -0.45
PRKDCP78527 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC12.26□□□□□ -0.45
PRKDCP78527 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC12.26□□□□□ -0.45
PRKDCP78527 CALR4P-201ENST00000431943 946 ntBASIC12.26□□□□□ -0.45
PRKDCP78527 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC12.26□□□□□ -0.45
PRKDCP78527 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC12.26□□□□□ -0.45
PRKDCP78527 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC12.26□□□□□ -0.45
PRKDCP78527 AC023310.3-201ENST00000557027 670 ntBASIC12.26□□□□□ -0.45
PRKDCP78527 AC100756.1-201ENST00000562736 682 ntBASIC12.26□□□□□ -0.45
PRKDCP78527 AC138749.3-201ENST00000567691 622 ntBASIC12.26□□□□□ -0.45
PRKDCP78527 AL589739.1-201ENST00000607720 493 ntBASIC12.26□□□□□ -0.45
PRKDCP78527 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC12.26□□□□□ -0.45
PRKDCP78527 AC116165.1-201ENST00000611806 668 ntBASIC12.26□□□□□ -0.45
PRKDCP78527 RPS24-214ENST00000613865 538 ntTSL 5 BASIC12.26□□□□□ -0.45
PRKDCP78527 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
PRKDCP78527 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC12.26□□□□□ -0.45
PRKDCP78527 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC12.26□□□□□ -0.45
PRKDCP78527 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
PRKDCP78527 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
PRKDCP78527 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC12.25□□□□□ -0.45
PRKDCP78527 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
PRKDCP78527 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
PRKDCP78527 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
PRKDCP78527 RPL7P3-201ENST00000441388 714 ntBASIC12.25□□□□□ -0.45
PRKDCP78527 AC079328.1-201ENST00000560358 952 ntBASIC12.25□□□□□ -0.45
PRKDCP78527 AC128714.1-201ENST00000637035 887 ntBASIC12.25□□□□□ -0.45
PRKDCP78527 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC12.25□□□□□ -0.45
PRKDCP78527 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC12.25□□□□□ -0.45
PRKDCP78527 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.45
PRKDCP78527 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC12.25□□□□□ -0.45
PRKDCP78527 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.45
PRKDCP78527 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
PRKDCP78527 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
PRKDCP78527 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
PRKDCP78527 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC12.25□□□□□ -0.45
PRKDCP78527 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC12.25□□□□□ -0.45
PRKDCP78527 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
PRKDCP78527 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
PRKDCP78527 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC12.25□□□□□ -0.45
PRKDCP78527 AL079307.3-201ENST00000556114 283 ntBASIC12.25□□□□□ -0.45
PRKDCP78527 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
PRKDCP78527 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
PRKDCP78527 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
PRKDCP78527 AL020996.1-203ENST00000536896 2307 ntBASIC12.25□□□□□ -0.45
PRKDCP78527 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
PRKDCP78527 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC12.25□□□□□ -0.45
PRKDCP78527 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC12.25□□□□□ -0.45
PRKDCP78527 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
PRKDCP78527 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
PRKDCP78527 STX1A-203ENST00000395155 783 ntTSL 2 BASIC12.25□□□□□ -0.45
PRKDCP78527 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC12.25□□□□□ -0.45
PRKDCP78527 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC12.25□□□□□ -0.45
PRKDCP78527 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC12.25□□□□□ -0.45
PRKDCP78527 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC12.25□□□□□ -0.45
PRKDCP78527 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
PRKDCP78527 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC12.25□□□□□ -0.45
PRKDCP78527 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC12.25□□□□□ -0.45
PRKDCP78527 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC12.25□□□□□ -0.45
PRKDCP78527 SPCS2P2-201ENST00000603270 608 ntBASIC12.25□□□□□ -0.45
PRKDCP78527 AC015967.2-201ENST00000624092 234 ntBASIC12.25□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms