Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
LMO4P61968 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
LMO4P61968 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC14.07□□□□□ -0.16
LMO4P61968 TPR-209ENST00000613151 2478 ntTSL 5 BASIC14.07□□□□□ -0.16
LMO4P61968 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC14.07□□□□□ -0.16
LMO4P61968 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC14.07□□□□□ -0.16
LMO4P61968 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC14.07□□□□□ -0.16
LMO4P61968 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LMO4P61968 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LMO4P61968 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC14.07□□□□□ -0.16
LMO4P61968 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LMO4P61968 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LMO4P61968 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
LMO4P61968 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LMO4P61968 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LMO4P61968 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LMO4P61968 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
LMO4P61968 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LMO4P61968 AL139400.1-201ENST00000366220 510 ntBASIC14.07□□□□□ -0.16
LMO4P61968 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC14.07□□□□□ -0.16
LMO4P61968 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
LMO4P61968 SLC25A1P3-201ENST00000395415 828 ntBASIC14.07□□□□□ -0.16
LMO4P61968 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
LMO4P61968 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC14.07□□□□□ -0.16
LMO4P61968 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC14.07□□□□□ -0.16
LMO4P61968 THTPA-204ENST00000554970 569 ntTSL 4 BASIC14.07□□□□□ -0.16
LMO4P61968 THTPA-206ENST00000556015 535 ntTSL 3 BASIC14.07□□□□□ -0.16
LMO4P61968 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC14.07□□□□□ -0.16
LMO4P61968 AC099522.2-201ENST00000607001 744 ntBASIC14.07□□□□□ -0.16
LMO4P61968 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC14.07□□□□□ -0.16
LMO4P61968 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC14.07□□□□□ -0.16
LMO4P61968 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
LMO4P61968 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LMO4P61968 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LMO4P61968 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
LMO4P61968 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC14.07□□□□□ -0.16
LMO4P61968 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LMO4P61968 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC14.07□□□□□ -0.16
LMO4P61968 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC14.07□□□□□ -0.16
LMO4P61968 AC093525.9-201ENST00000624961 1746 ntBASIC14.07□□□□□ -0.16
LMO4P61968 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
LMO4P61968 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LMO4P61968 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
LMO4P61968 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
LMO4P61968 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
LMO4P61968 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
LMO4P61968 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
LMO4P61968 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LMO4P61968 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC14.06□□□□□ -0.16
LMO4P61968 AC134043.2-201ENST00000624206 2238 ntBASIC14.06□□□□□ -0.16
LMO4P61968 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC14.06□□□□□ -0.16
LMO4P61968 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LMO4P61968 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
LMO4P61968 HMGA1P7-201ENST00000406908 502 ntBASIC14.06□□□□□ -0.16
LMO4P61968 AL355306.1-201ENST00000415580 579 ntBASIC14.06□□□□□ -0.16
LMO4P61968 TSEN15P1-201ENST00000423257 515 ntBASIC14.06□□□□□ -0.16
LMO4P61968 AL671277.1-201ENST00000429656 993 ntBASIC14.06□□□□□ -0.16
LMO4P61968 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC14.06□□□□□ -0.16
LMO4P61968 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC14.06□□□□□ -0.16
LMO4P61968 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
LMO4P61968 GATB-205ENST00000508611 605 ntTSL 2 BASIC14.06□□□□□ -0.16
LMO4P61968 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC14.06□□□□□ -0.16
LMO4P61968 FAM86C2P-203ENST00000528684 1004 ntBASIC14.06□□□□□ -0.16
LMO4P61968 RNF34-208ENST00000555076 593 ntTSL 3 BASIC14.06□□□□□ -0.16
LMO4P61968 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC14.06□□□□□ -0.16
LMO4P61968 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC14.06□□□□□ -0.16
LMO4P61968 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
LMO4P61968 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
LMO4P61968 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LMO4P61968 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
LMO4P61968 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LMO4P61968 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LMO4P61968 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
LMO4P61968 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
LMO4P61968 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
LMO4P61968 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
LMO4P61968 GOLGA6L17P-202ENST00000614358 1398 ntBASIC14.06□□□□□ -0.16
LMO4P61968 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
LMO4P61968 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC14.06□□□□□ -0.16
LMO4P61968 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
LMO4P61968 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LMO4P61968 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
LMO4P61968 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC14.05□□□□□ -0.16
LMO4P61968 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
LMO4P61968 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC14.05□□□□□ -0.16
LMO4P61968 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LMO4P61968 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
LMO4P61968 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
LMO4P61968 AL138688.1-201ENST00000624851 1594 ntBASIC14.05□□□□□ -0.16
LMO4P61968 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LMO4P61968 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LMO4P61968 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC14.05□□□□□ -0.16
LMO4P61968 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
LMO4P61968 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LMO4P61968 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
LMO4P61968 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC14.05□□□□□ -0.16
LMO4P61968 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC14.05□□□□□ -0.16
LMO4P61968 CYMP-203ENST00000474680 1263 ntBASIC14.05□□□□□ -0.16
LMO4P61968 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC14.05□□□□□ -0.16
LMO4P61968 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 67 ms