Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC17.02■□□□□ 0.32
SRP54P61011 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SRP54P61011 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
SRP54P61011 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SRP54P61011 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SRP54P61011 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SRP54P61011 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SRP54P61011 LINC00304-203ENST00000565008 1864 ntBASIC17.02■□□□□ 0.32
SRP54P61011 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC17.02■□□□□ 0.32
SRP54P61011 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SRP54P61011 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SRP54P61011 MRPL20P1-201ENST00000400819 433 ntBASIC17.02■□□□□ 0.32
SRP54P61011 UPF3AP3-201ENST00000420996 769 ntBASIC17.02■□□□□ 0.32
SRP54P61011 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC17.02■□□□□ 0.32
SRP54P61011 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC17.02■□□□□ 0.32
SRP54P61011 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC17.02■□□□□ 0.32
SRP54P61011 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC17.02■□□□□ 0.32
SRP54P61011 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SRP54P61011 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SRP54P61011 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SRP54P61011 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SRP54P61011 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC17.02■□□□□ 0.31
SRP54P61011 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
SRP54P61011 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SRP54P61011 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SRP54P61011 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SRP54P61011 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
SRP54P61011 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
SRP54P61011 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SRP54P61011 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC17.01■□□□□ 0.31
SRP54P61011 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SRP54P61011 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
SRP54P61011 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC17.01■□□□□ 0.31
SRP54P61011 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SRP54P61011 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SRP54P61011 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SRP54P61011 AL590787.1-201ENST00000568856 1315 ntBASIC17.01■□□□□ 0.31
SRP54P61011 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
SRP54P61011 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SRP54P61011 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SRP54P61011 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SRP54P61011 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC17.01■□□□□ 0.31
SRP54P61011 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
SRP54P61011 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
SRP54P61011 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
SRP54P61011 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC17.01■□□□□ 0.31
SRP54P61011 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC17.01■□□□□ 0.31
SRP54P61011 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SRP54P61011 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SRP54P61011 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC17.01■□□□□ 0.31
SRP54P61011 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC17.01■□□□□ 0.31
SRP54P61011 AC004832.2-201ENST00000426397 482 ntBASIC17.01■□□□□ 0.31
SRP54P61011 DNAJB3-201ENST00000446806 729 ntBASIC17.01■□□□□ 0.31
SRP54P61011 HCG4B-203ENST00000450128 991 ntBASIC17.01■□□□□ 0.31
SRP54P61011 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC17.01■□□□□ 0.31
SRP54P61011 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SRP54P61011 RIN3-211ENST00000557762 517 ntTSL 3 BASIC17.01■□□□□ 0.31
SRP54P61011 AC010327.4-202ENST00000591484 748 ntBASIC17.01■□□□□ 0.31
SRP54P61011 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SRP54P61011 AC010654.1-201ENST00000615722 808 ntBASIC17.01■□□□□ 0.31
SRP54P61011 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SRP54P61011 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SRP54P61011 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
SRP54P61011 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SRP54P61011 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SRP54P61011 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SRP54P61011 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SRP54P61011 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SRP54P61011 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
SRP54P61011 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.01■□□□□ 0.31
SRP54P61011 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SRP54P61011 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC17.01■□□□□ 0.31
SRP54P61011 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SRP54P61011 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC17.01■□□□□ 0.31
SRP54P61011 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17■□□□□ 0.31
SRP54P61011 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC17■□□□□ 0.31
SRP54P61011 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17■□□□□ 0.31
SRP54P61011 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC17■□□□□ 0.31
SRP54P61011 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17■□□□□ 0.31
SRP54P61011 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC17■□□□□ 0.31
SRP54P61011 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC17■□□□□ 0.31
SRP54P61011 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17■□□□□ 0.31
SRP54P61011 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17■□□□□ 0.31
SRP54P61011 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SRP54P61011 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SRP54P61011 FER1L4-210ENST00000615531 5998 ntBASIC17■□□□□ 0.31
SRP54P61011 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SRP54P61011 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
SRP54P61011 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SRP54P61011 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC17■□□□□ 0.31
SRP54P61011 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC17■□□□□ 0.31
SRP54P61011 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC17■□□□□ 0.31
SRP54P61011 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17■□□□□ 0.31
SRP54P61011 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC17■□□□□ 0.31
SRP54P61011 CIPC-205ENST00000555437 566 ntTSL 3 BASIC17■□□□□ 0.31
SRP54P61011 MIR3687-2-201ENST00000577708 61 ntBASIC17■□□□□ 0.31
SRP54P61011 PI4KAP1-204ENST00000612579 1703 ntBASIC17■□□□□ 0.31
SRP54P61011 MIR3687-1-201ENST00000614492 61 ntBASIC17■□□□□ 0.31
SRP54P61011 HOTTIP_1.1-201ENST00000620415 57 ntBASIC17■□□□□ 0.31
SRP54P61011 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms