Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC18.03■□□□□ 0.48
HDAC4P56524 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
HDAC4P56524 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HDAC4P56524 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC18.03■□□□□ 0.48
HDAC4P56524 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC18.03■□□□□ 0.48
HDAC4P56524 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC18.03■□□□□ 0.48
HDAC4P56524 LINC02012-201ENST00000608206 1725 ntBASIC18.03■□□□□ 0.48
HDAC4P56524 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HDAC4P56524 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC18.03■□□□□ 0.48
HDAC4P56524 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC18.03■□□□□ 0.48
HDAC4P56524 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
HDAC4P56524 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC18.03■□□□□ 0.48
HDAC4P56524 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HDAC4P56524 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
HDAC4P56524 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HDAC4P56524 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HDAC4P56524 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HDAC4P56524 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HDAC4P56524 AC009053.2-201ENST00000563701 2365 ntBASIC18.02■□□□□ 0.48
HDAC4P56524 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
HDAC4P56524 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HDAC4P56524 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HDAC4P56524 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HDAC4P56524 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
HDAC4P56524 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC18.02■□□□□ 0.48
HDAC4P56524 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HDAC4P56524 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HDAC4P56524 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
HDAC4P56524 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HDAC4P56524 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC18.02■□□□□ 0.48
HDAC4P56524 S100A2-206ENST00000497140 697 ntTSL 2 BASIC18.02■□□□□ 0.48
HDAC4P56524 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC18.02■□□□□ 0.48
HDAC4P56524 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC18.02■□□□□ 0.48
HDAC4P56524 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC18.02■□□□□ 0.48
HDAC4P56524 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC18.02■□□□□ 0.48
HDAC4P56524 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HDAC4P56524 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HDAC4P56524 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HDAC4P56524 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC18.02■□□□□ 0.48
HDAC4P56524 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC18.02■□□□□ 0.48
HDAC4P56524 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC18.02■□□□□ 0.48
HDAC4P56524 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HDAC4P56524 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
HDAC4P56524 AC097637.2-201ENST00000624096 1997 ntBASIC18.02■□□□□ 0.47
HDAC4P56524 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.47
HDAC4P56524 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
HDAC4P56524 GID4-202ENST00000376345 1391 ntTSL 3 BASIC18.02■□□□□ 0.47
HDAC4P56524 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
HDAC4P56524 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
HDAC4P56524 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HDAC4P56524 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HDAC4P56524 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
HDAC4P56524 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HDAC4P56524 EGFEM1P-202ENST00000431685 1563 ntBASIC18.01■□□□□ 0.47
HDAC4P56524 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HDAC4P56524 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HDAC4P56524 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HDAC4P56524 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC18.01■□□□□ 0.47
HDAC4P56524 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HDAC4P56524 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HDAC4P56524 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC18.01■□□□□ 0.47
HDAC4P56524 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
HDAC4P56524 ACTG1P4-201ENST00000425123 1122 ntBASIC18.01■□□□□ 0.47
HDAC4P56524 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
HDAC4P56524 EMBP1-201ENST00000458200 901 ntBASIC18.01■□□□□ 0.47
HDAC4P56524 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
HDAC4P56524 BMF-207ENST00000559701 630 ntTSL 3 BASIC18.01■□□□□ 0.47
HDAC4P56524 AL022326.1-202ENST00000641533 845 ntBASIC18.01■□□□□ 0.47
HDAC4P56524 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC18.01■□□□□ 0.47
HDAC4P56524 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HDAC4P56524 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
HDAC4P56524 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HDAC4P56524 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HDAC4P56524 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HDAC4P56524 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
HDAC4P56524 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HDAC4P56524 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HDAC4P56524 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HDAC4P56524 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HDAC4P56524 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
HDAC4P56524 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HDAC4P56524 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC18■□□□□ 0.47
HDAC4P56524 AC092053.1-201ENST00000605787 1936 ntBASIC18■□□□□ 0.47
HDAC4P56524 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC18■□□□□ 0.47
HDAC4P56524 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
HDAC4P56524 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
HDAC4P56524 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC18■□□□□ 0.47
HDAC4P56524 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC18■□□□□ 0.47
HDAC4P56524 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC18■□□□□ 0.47
HDAC4P56524 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
HDAC4P56524 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC18■□□□□ 0.47
HDAC4P56524 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC18■□□□□ 0.47
HDAC4P56524 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC18■□□□□ 0.47
HDAC4P56524 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC18■□□□□ 0.47
HDAC4P56524 PAM16-208ENST00000573553 722 ntTSL 2 BASIC18■□□□□ 0.47
HDAC4P56524 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC18■□□□□ 0.47
HDAC4P56524 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC18■□□□□ 0.47
HDAC4P56524 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
HDAC4P56524 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC18■□□□□ 0.47
HDAC4P56524 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms