Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PTPN9P43378 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PTPN9P43378 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PTPN9P43378 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PTPN9P43378 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PTPN9P43378 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
PTPN9P43378 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PTPN9P43378 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
PTPN9P43378 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
PTPN9P43378 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
PTPN9P43378 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PTPN9P43378 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
PTPN9P43378 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
PTPN9P43378 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
PTPN9P43378 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
PTPN9P43378 PRORSD1P-202ENST00000563365 2154 ntBASIC17.89■□□□□ 0.45
PTPN9P43378 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PTPN9P43378 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC17.89■□□□□ 0.45
PTPN9P43378 AC022211.2-201ENST00000585075 2527 ntBASIC17.89■□□□□ 0.45
PTPN9P43378 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
PTPN9P43378 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC17.89■□□□□ 0.45
PTPN9P43378 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC17.89■□□□□ 0.45
PTPN9P43378 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC17.89■□□□□ 0.45
PTPN9P43378 KRT18P67-201ENST00000432816 1264 ntBASIC17.89■□□□□ 0.45
PTPN9P43378 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC17.89■□□□□ 0.45
PTPN9P43378 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC17.89■□□□□ 0.45
PTPN9P43378 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC17.89■□□□□ 0.45
PTPN9P43378 OR7E14P-202ENST00000530490 1290 ntBASIC17.89■□□□□ 0.45
PTPN9P43378 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC17.89■□□□□ 0.45
PTPN9P43378 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC17.89■□□□□ 0.45
PTPN9P43378 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC17.89■□□□□ 0.45
PTPN9P43378 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC17.89■□□□□ 0.45
PTPN9P43378 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC17.89■□□□□ 0.45
PTPN9P43378 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC17.89■□□□□ 0.45
PTPN9P43378 AC104692.2-201ENST00000603054 253 ntBASIC17.89■□□□□ 0.45
PTPN9P43378 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC17.89■□□□□ 0.45
PTPN9P43378 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
PTPN9P43378 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
PTPN9P43378 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC17.89■□□□□ 0.45
PTPN9P43378 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC17.89■□□□□ 0.45
PTPN9P43378 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
PTPN9P43378 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC17.89■□□□□ 0.45
PTPN9P43378 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PTPN9P43378 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
PTPN9P43378 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PTPN9P43378 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PTPN9P43378 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PTPN9P43378 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
PTPN9P43378 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.45
PTPN9P43378 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
PTPN9P43378 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PTPN9P43378 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PTPN9P43378 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.88■□□□□ 0.45
PTPN9P43378 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
PTPN9P43378 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTPN9P43378 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTPN9P43378 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTPN9P43378 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC17.88■□□□□ 0.45
PTPN9P43378 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17.88■□□□□ 0.45
PTPN9P43378 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTPN9P43378 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTPN9P43378 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTPN9P43378 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PTPN9P43378 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC17.88■□□□□ 0.45
PTPN9P43378 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PTPN9P43378 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC17.88■□□□□ 0.45
PTPN9P43378 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTPN9P43378 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC17.88■□□□□ 0.45
PTPN9P43378 KRT18P27-201ENST00000427733 1299 ntBASIC17.88■□□□□ 0.45
PTPN9P43378 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC17.88■□□□□ 0.45
PTPN9P43378 RPS2P1-201ENST00000434010 821 ntBASIC17.88■□□□□ 0.45
PTPN9P43378 AF186996.4-201ENST00000467186 377 ntBASIC17.88■□□□□ 0.45
PTPN9P43378 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC17.88■□□□□ 0.45
PTPN9P43378 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
PTPN9P43378 DUX4L17-201ENST00000557360 1267 ntBASIC17.88■□□□□ 0.45
PTPN9P43378 CALM3-211ENST00000598871 561 ntTSL 4 BASIC17.88■□□□□ 0.45
PTPN9P43378 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
PTPN9P43378 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC17.88■□□□□ 0.45
PTPN9P43378 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
PTPN9P43378 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PTPN9P43378 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC17.88■□□□□ 0.45
PTPN9P43378 AC243591.1-201ENST00000452967 1364 ntBASIC17.88■□□□□ 0.45
PTPN9P43378 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC17.88■□□□□ 0.45
PTPN9P43378 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTPN9P43378 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTPN9P43378 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC17.88■□□□□ 0.45
PTPN9P43378 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
PTPN9P43378 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PTPN9P43378 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTPN9P43378 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
PTPN9P43378 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTPN9P43378 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTPN9P43378 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC17.87■□□□□ 0.45
PTPN9P43378 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTPN9P43378 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC17.87■□□□□ 0.45
PTPN9P43378 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PTPN9P43378 ELK2BP-201ENST00000415014 1224 ntBASIC17.87■□□□□ 0.45
PTPN9P43378 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC17.87■□□□□ 0.45
PTPN9P43378 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC17.87■□□□□ 0.45
PTPN9P43378 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 67.5 ms