Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC15.82■□□□□ 0.12
RFC3P40938 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
RFC3P40938 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RFC3P40938 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
RFC3P40938 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC15.82■□□□□ 0.12
RFC3P40938 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RFC3P40938 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RFC3P40938 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC15.82■□□□□ 0.12
RFC3P40938 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RFC3P40938 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
RFC3P40938 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RFC3P40938 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
RFC3P40938 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
RFC3P40938 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
RFC3P40938 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC15.82■□□□□ 0.12
RFC3P40938 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RFC3P40938 CD276-203ENST00000537340 2439 ntTSL 2 BASIC15.82■□□□□ 0.12
RFC3P40938 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RFC3P40938 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
RFC3P40938 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC15.82■□□□□ 0.12
RFC3P40938 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC15.82■□□□□ 0.12
RFC3P40938 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC15.81■□□□□ 0.12
RFC3P40938 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RFC3P40938 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
RFC3P40938 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RFC3P40938 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC15.81■□□□□ 0.12
RFC3P40938 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RFC3P40938 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
RFC3P40938 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC15.81■□□□□ 0.12
RFC3P40938 LINC00982-205ENST00000420957 435 ntBASIC15.81■□□□□ 0.12
RFC3P40938 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC15.81■□□□□ 0.12
RFC3P40938 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RFC3P40938 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC15.81■□□□□ 0.12
RFC3P40938 RPS15P9-201ENST00000494093 319 ntBASIC15.81■□□□□ 0.12
RFC3P40938 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC15.81■□□□□ 0.12
RFC3P40938 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
RFC3P40938 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
RFC3P40938 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
RFC3P40938 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RFC3P40938 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
RFC3P40938 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
RFC3P40938 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RFC3P40938 LTF-203ENST00000426532 2494 ntTSL 2 BASIC15.8■□□□□ 0.12
RFC3P40938 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC15.8■□□□□ 0.12
RFC3P40938 NME9-203ENST00000383180 2133 ntTSL 2 BASIC15.8■□□□□ 0.12
RFC3P40938 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RFC3P40938 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
RFC3P40938 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
RFC3P40938 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
RFC3P40938 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
RFC3P40938 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RFC3P40938 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RFC3P40938 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
RFC3P40938 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
RFC3P40938 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RFC3P40938 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
RFC3P40938 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
RFC3P40938 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RFC3P40938 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RFC3P40938 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RFC3P40938 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
RFC3P40938 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
RFC3P40938 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
RFC3P40938 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC15.8■□□□□ 0.12
RFC3P40938 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC15.8■□□□□ 0.12
RFC3P40938 KRT18P2-201ENST00000447938 1258 ntBASIC15.8■□□□□ 0.12
RFC3P40938 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC15.8■□□□□ 0.12
RFC3P40938 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC15.8■□□□□ 0.12
RFC3P40938 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
RFC3P40938 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC15.8■□□□□ 0.12
RFC3P40938 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC15.8■□□□□ 0.12
RFC3P40938 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RFC3P40938 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC15.8■□□□□ 0.12
RFC3P40938 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
RFC3P40938 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RFC3P40938 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RFC3P40938 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC15.8■□□□□ 0.12
RFC3P40938 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC15.8■□□□□ 0.12
RFC3P40938 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
RFC3P40938 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
RFC3P40938 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RFC3P40938 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
RFC3P40938 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
RFC3P40938 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RFC3P40938 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC15.8■□□□□ 0.12
RFC3P40938 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
RFC3P40938 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RFC3P40938 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC15.79■□□□□ 0.12
RFC3P40938 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
RFC3P40938 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
RFC3P40938 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
RFC3P40938 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC15.79■□□□□ 0.12
RFC3P40938 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC15.79■□□□□ 0.12
RFC3P40938 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC15.79■□□□□ 0.12
RFC3P40938 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC15.79■□□□□ 0.12
RFC3P40938 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
RFC3P40938 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC15.79■□□□□ 0.12
RFC3P40938 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
RFC3P40938 MYCLP1-201ENST00000372451 1075 ntBASIC15.79■□□□□ 0.12
RFC3P40938 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms