Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC16.5■□□□□ 0.23
MSX2P35548 UNC93B2-201ENST00000285383 730 ntBASIC16.5■□□□□ 0.23
MSX2P35548 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
MSX2P35548 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
MSX2P35548 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSX2P35548 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
MSX2P35548 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
MSX2P35548 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
MSX2P35548 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
MSX2P35548 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC16.5■□□□□ 0.23
MSX2P35548 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC16.5■□□□□ 0.23
MSX2P35548 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
MSX2P35548 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSX2P35548 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSX2P35548 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSX2P35548 AP002414.2-201ENST00000591780 3365 ntBASIC16.5■□□□□ 0.23
MSX2P35548 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
MSX2P35548 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC16.5■□□□□ 0.23
MSX2P35548 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC16.5■□□□□ 0.23
MSX2P35548 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSX2P35548 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
MSX2P35548 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSX2P35548 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSX2P35548 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSX2P35548 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
MSX2P35548 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
MSX2P35548 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC16.49■□□□□ 0.23
MSX2P35548 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC16.49■□□□□ 0.23
MSX2P35548 ADM-208ENST00000534464 1640 ntTSL 2 BASIC16.49■□□□□ 0.23
MSX2P35548 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC16.49■□□□□ 0.23
MSX2P35548 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
MSX2P35548 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
MSX2P35548 AC092850.2-201ENST00000623821 2697 ntBASIC16.49■□□□□ 0.23
MSX2P35548 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
MSX2P35548 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
MSX2P35548 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
MSX2P35548 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
MSX2P35548 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
MSX2P35548 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.49■□□□□ 0.23
MSX2P35548 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
MSX2P35548 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC16.49■□□□□ 0.23
MSX2P35548 KRT8P9-201ENST00000558927 1449 ntBASIC16.49■□□□□ 0.23
MSX2P35548 IRX5-204ENST00000560154 879 ntTSL 5 BASIC16.49■□□□□ 0.23
MSX2P35548 AC233702.5-201ENST00000584107 538 ntBASIC16.49■□□□□ 0.23
MSX2P35548 TMED1-207ENST00000591695 809 ntTSL 5 BASIC16.49■□□□□ 0.23
MSX2P35548 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
MSX2P35548 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
MSX2P35548 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
MSX2P35548 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC16.49■□□□□ 0.23
MSX2P35548 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
MSX2P35548 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
MSX2P35548 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
MSX2P35548 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
MSX2P35548 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
MSX2P35548 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC16.49■□□□□ 0.23
MSX2P35548 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
MSX2P35548 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
MSX2P35548 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC16.49■□□□□ 0.23
MSX2P35548 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC16.49■□□□□ 0.23
MSX2P35548 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
MSX2P35548 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC16.48■□□□□ 0.23
MSX2P35548 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
MSX2P35548 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
MSX2P35548 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC16.48■□□□□ 0.23
MSX2P35548 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
MSX2P35548 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
MSX2P35548 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC16.48■□□□□ 0.23
MSX2P35548 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
MSX2P35548 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
MSX2P35548 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC16.48■□□□□ 0.23
MSX2P35548 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
MSX2P35548 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
MSX2P35548 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
MSX2P35548 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
MSX2P35548 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
MSX2P35548 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC16.48■□□□□ 0.23
MSX2P35548 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
MSX2P35548 CD99P1-205ENST00000527459 561 ntBASIC16.48■□□□□ 0.23
MSX2P35548 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
MSX2P35548 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
MSX2P35548 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
MSX2P35548 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
MSX2P35548 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
MSX2P35548 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.48■□□□□ 0.23
MSX2P35548 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
MSX2P35548 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
MSX2P35548 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
MSX2P35548 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
MSX2P35548 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
MSX2P35548 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
MSX2P35548 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
MSX2P35548 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
MSX2P35548 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
MSX2P35548 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
MSX2P35548 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
MSX2P35548 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
MSX2P35548 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
MSX2P35548 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.47■□□□□ 0.23
MSX2P35548 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
MSX2P35548 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms