Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MSX1P28360 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
MSX1P28360 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC15.81■□□□□ 0.12
MSX1P28360 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
MSX1P28360 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC15.81■□□□□ 0.12
MSX1P28360 PCDHB18P-201ENST00000524813 2368 ntBASIC15.81■□□□□ 0.12
MSX1P28360 AC145285.3-201ENST00000564603 959 ntBASIC15.81■□□□□ 0.12
MSX1P28360 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
MSX1P28360 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC15.81■□□□□ 0.12
MSX1P28360 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
MSX1P28360 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC15.81■□□□□ 0.12
MSX1P28360 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC15.81■□□□□ 0.12
MSX1P28360 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC15.81■□□□□ 0.12
MSX1P28360 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
MSX1P28360 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
MSX1P28360 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
MSX1P28360 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
MSX1P28360 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
MSX1P28360 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MSX1P28360 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
MSX1P28360 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC15.8■□□□□ 0.12
MSX1P28360 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
MSX1P28360 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC15.8■□□□□ 0.12
MSX1P28360 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSX1P28360 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC15.8■□□□□ 0.12
MSX1P28360 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSX1P28360 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
MSX1P28360 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
MSX1P28360 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
MSX1P28360 AL023806.1-201ENST00000603994 1649 ntBASIC15.8■□□□□ 0.12
MSX1P28360 AC148477.5-201ENST00000625164 1645 ntBASIC15.8■□□□□ 0.12
MSX1P28360 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
MSX1P28360 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSX1P28360 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSX1P28360 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC15.8■□□□□ 0.12
MSX1P28360 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSX1P28360 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSX1P28360 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC15.8■□□□□ 0.12
MSX1P28360 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC15.8■□□□□ 0.12
MSX1P28360 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC15.8■□□□□ 0.12
MSX1P28360 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
MSX1P28360 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
MSX1P28360 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC15.8■□□□□ 0.12
MSX1P28360 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC15.8■□□□□ 0.12
MSX1P28360 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC15.8■□□□□ 0.12
MSX1P28360 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC15.8■□□□□ 0.12
MSX1P28360 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC15.8■□□□□ 0.12
MSX1P28360 AL589182.2-201ENST00000619332 1049 ntBASIC15.8■□□□□ 0.12
MSX1P28360 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSX1P28360 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
MSX1P28360 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSX1P28360 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC15.8■□□□□ 0.12
MSX1P28360 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC15.8■□□□□ 0.12
MSX1P28360 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC15.8■□□□□ 0.12
MSX1P28360 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC15.8■□□□□ 0.12
MSX1P28360 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
MSX1P28360 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
MSX1P28360 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
MSX1P28360 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
MSX1P28360 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC15.8■□□□□ 0.12
MSX1P28360 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSX1P28360 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSX1P28360 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
MSX1P28360 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
MSX1P28360 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
MSX1P28360 NCF1C-201ENST00000438382 1427 ntBASIC15.79■□□□□ 0.12
MSX1P28360 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
MSX1P28360 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
MSX1P28360 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
MSX1P28360 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
MSX1P28360 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
MSX1P28360 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
MSX1P28360 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
MSX1P28360 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC15.79■□□□□ 0.12
MSX1P28360 CSF3-203ENST00000394148 622 ntTSL 3 BASIC15.79■□□□□ 0.12
MSX1P28360 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
MSX1P28360 BX005266.1-201ENST00000473402 457 ntBASIC15.79■□□□□ 0.12
MSX1P28360 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
MSX1P28360 IGHV3-22-201ENST00000520721 359 ntBASIC15.79■□□□□ 0.12
MSX1P28360 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC15.79■□□□□ 0.12
MSX1P28360 SART3-203ENST00000546611 1184 ntBASIC15.79■□□□□ 0.12
MSX1P28360 CD63-204ENST00000546939 779 ntTSL 3 BASIC15.79■□□□□ 0.12
MSX1P28360 AC021087.4-201ENST00000563761 564 ntBASIC15.79■□□□□ 0.12
MSX1P28360 MTDHP4-201ENST00000600287 670 ntBASIC15.79■□□□□ 0.12
MSX1P28360 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
MSX1P28360 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
MSX1P28360 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
MSX1P28360 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
MSX1P28360 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
MSX1P28360 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC15.79■□□□□ 0.12
MSX1P28360 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
MSX1P28360 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
MSX1P28360 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
MSX1P28360 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
MSX1P28360 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
MSX1P28360 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
MSX1P28360 AC097637.2-201ENST00000624096 1997 ntBASIC15.78■□□□□ 0.12
MSX1P28360 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
MSX1P28360 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
MSX1P28360 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms