Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC17.61■□□□□ 0.41
COL9A1P20849 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL9A1P20849 PTCHD3P3-201ENST00000403073 906 ntBASIC17.61■□□□□ 0.41
COL9A1P20849 MIR663B-201ENST00000408361 115 ntBASIC17.61■□□□□ 0.41
COL9A1P20849 RN7SL589P-201ENST00000481268 310 ntBASIC17.61■□□□□ 0.41
COL9A1P20849 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC17.61■□□□□ 0.41
COL9A1P20849 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC17.61■□□□□ 0.41
COL9A1P20849 IGHV3-52-201ENST00000519770 353 ntBASIC17.61■□□□□ 0.41
COL9A1P20849 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL9A1P20849 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC17.61■□□□□ 0.41
COL9A1P20849 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC17.61■□□□□ 0.41
COL9A1P20849 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL9A1P20849 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
COL9A1P20849 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL9A1P20849 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL9A1P20849 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL9A1P20849 AC006538.1-201ENST00000567905 1585 ntBASIC17.61■□□□□ 0.41
COL9A1P20849 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL9A1P20849 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
COL9A1P20849 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL9A1P20849 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL9A1P20849 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.61■□□□□ 0.41
COL9A1P20849 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL9A1P20849 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC17.6■□□□□ 0.41
COL9A1P20849 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL9A1P20849 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
COL9A1P20849 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL9A1P20849 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL9A1P20849 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC17.6■□□□□ 0.41
COL9A1P20849 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC17.6■□□□□ 0.41
COL9A1P20849 AC234783.1-201ENST00000441761 496 ntBASIC17.6■□□□□ 0.41
COL9A1P20849 SPDYE14P-201ENST00000442619 822 ntBASIC17.6■□□□□ 0.41
COL9A1P20849 MPRIPP1-201ENST00000452433 1089 ntBASIC17.6■□□□□ 0.41
COL9A1P20849 TMPRSS11CP-201ENST00000453277 683 ntBASIC17.6■□□□□ 0.41
COL9A1P20849 BNIP3P42-201ENST00000454982 569 ntBASIC17.6■□□□□ 0.41
COL9A1P20849 AC099548.2-209ENST00000480264 625 ntBASIC17.6■□□□□ 0.41
COL9A1P20849 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
COL9A1P20849 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL9A1P20849 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC17.6■□□□□ 0.41
COL9A1P20849 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC17.6■□□□□ 0.41
COL9A1P20849 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC17.6■□□□□ 0.41
COL9A1P20849 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC17.6■□□□□ 0.41
COL9A1P20849 BNIP3P29-201ENST00000598302 571 ntBASIC17.6■□□□□ 0.41
COL9A1P20849 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL9A1P20849 AC011447.5-201ENST00000616168 564 ntBASIC17.6■□□□□ 0.41
COL9A1P20849 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
COL9A1P20849 MIR6080-201ENST00000617359 66 ntBASIC17.6■□□□□ 0.41
COL9A1P20849 CFTRP2-201ENST00000634304 199 ntBASIC17.6■□□□□ 0.41
COL9A1P20849 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL9A1P20849 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC17.6■□□□□ 0.41
COL9A1P20849 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC17.6■□□□□ 0.41
COL9A1P20849 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC17.6■□□□□ 0.41
COL9A1P20849 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL9A1P20849 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL9A1P20849 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.6■□□□□ 0.41
COL9A1P20849 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL9A1P20849 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL9A1P20849 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL9A1P20849 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
COL9A1P20849 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL9A1P20849 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.6■□□□□ 0.41
COL9A1P20849 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC17.6■□□□□ 0.41
COL9A1P20849 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL9A1P20849 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
COL9A1P20849 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL9A1P20849 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC17.6■□□□□ 0.41
COL9A1P20849 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL9A1P20849 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.6■□□□□ 0.41
COL9A1P20849 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL9A1P20849 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL9A1P20849 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL9A1P20849 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL9A1P20849 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17.59■□□□□ 0.41
COL9A1P20849 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL9A1P20849 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
COL9A1P20849 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC17.59■□□□□ 0.41
COL9A1P20849 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC17.59■□□□□ 0.41
COL9A1P20849 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC17.59■□□□□ 0.41
COL9A1P20849 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL9A1P20849 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC17.59■□□□□ 0.41
COL9A1P20849 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL9A1P20849 AC100757.3-201ENST00000622361 1406 ntBASIC17.59■□□□□ 0.41
COL9A1P20849 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC17.59■□□□□ 0.41
COL9A1P20849 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
COL9A1P20849 ATP6V1G1-201ENST00000374050 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL9A1P20849 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
COL9A1P20849 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL9A1P20849 LINC00437-201ENST00000414161 791 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
COL9A1P20849 LINC00982-205ENST00000420957 435 ntBASIC17.59■□□□□ 0.41
COL9A1P20849 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC17.59■□□□□ 0.41
COL9A1P20849 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC17.59■□□□□ 0.41
COL9A1P20849 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC17.59■□□□□ 0.41
COL9A1P20849 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC17.59■□□□□ 0.41
COL9A1P20849 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC17.59■□□□□ 0.41
COL9A1P20849 AL590560.3-201ENST00000623350 461 ntBASIC17.59■□□□□ 0.41
COL9A1P20849 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC17.59■□□□□ 0.41
COL9A1P20849 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL9A1P20849 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL9A1P20849 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL9A1P20849 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms