Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
COL6A2P12110 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A2P12110 FRMD8P1-201ENST00000440433 1524 ntBASIC17.06■□□□□ 0.32
COL6A2P12110 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC17.06■□□□□ 0.32
COL6A2P12110 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A2P12110 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A2P12110 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC17.06■□□□□ 0.32
COL6A2P12110 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
COL6A2P12110 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A2P12110 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
COL6A2P12110 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A2P12110 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A2P12110 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A2P12110 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC17.06■□□□□ 0.32
COL6A2P12110 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC17.06■□□□□ 0.32
COL6A2P12110 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC17.06■□□□□ 0.32
COL6A2P12110 VENTXP7-201ENST00000475503 772 ntBASIC17.06■□□□□ 0.32
COL6A2P12110 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC17.06■□□□□ 0.32
COL6A2P12110 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A2P12110 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC17.06■□□□□ 0.32
COL6A2P12110 AC011467.2-201ENST00000598425 242 ntBASIC17.06■□□□□ 0.32
COL6A2P12110 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC17.06■□□□□ 0.32
COL6A2P12110 AD001527.2-201ENST00000622994 785 ntBASIC17.06■□□□□ 0.32
COL6A2P12110 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC17.06■□□□□ 0.32
COL6A2P12110 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A2P12110 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC17.06■□□□□ 0.32
COL6A2P12110 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
COL6A2P12110 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
COL6A2P12110 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A2P12110 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A2P12110 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC17.06■□□□□ 0.32
COL6A2P12110 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A2P12110 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A2P12110 RNF216P1-203ENST00000404404 2427 ntBASIC17.06■□□□□ 0.32
COL6A2P12110 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A2P12110 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A2P12110 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A2P12110 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A2P12110 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A2P12110 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A2P12110 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC17.05■□□□□ 0.32
COL6A2P12110 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A2P12110 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A2P12110 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC17.05■□□□□ 0.32
COL6A2P12110 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.05■□□□□ 0.32
COL6A2P12110 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A2P12110 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A2P12110 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A2P12110 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A2P12110 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A2P12110 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A2P12110 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
COL6A2P12110 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC17.05■□□□□ 0.32
COL6A2P12110 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
COL6A2P12110 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC17.05■□□□□ 0.32
COL6A2P12110 AP002490.2-201ENST00000524791 560 ntBASIC17.05■□□□□ 0.32
COL6A2P12110 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC17.05■□□□□ 0.32
COL6A2P12110 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC17.05■□□□□ 0.32
COL6A2P12110 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC17.05■□□□□ 0.32
COL6A2P12110 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A2P12110 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC17.05■□□□□ 0.32
COL6A2P12110 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A2P12110 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A2P12110 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A2P12110 CA12-203ENST00000422263 2556 ntTSL 2 BASIC17.05■□□□□ 0.32
COL6A2P12110 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC17.05■□□□□ 0.32
COL6A2P12110 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A2P12110 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A2P12110 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
COL6A2P12110 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
COL6A2P12110 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A2P12110 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A2P12110 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A2P12110 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC17.04■□□□□ 0.32
COL6A2P12110 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A2P12110 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC17.04■□□□□ 0.32
COL6A2P12110 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC17.04■□□□□ 0.32
COL6A2P12110 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A2P12110 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A2P12110 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC17.04■□□□□ 0.32
COL6A2P12110 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A2P12110 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A2P12110 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC17.04■□□□□ 0.32
COL6A2P12110 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC17.04■□□□□ 0.32
COL6A2P12110 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A2P12110 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
COL6A2P12110 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A2P12110 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A2P12110 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC17.04■□□□□ 0.32
COL6A2P12110 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC17.04■□□□□ 0.32
COL6A2P12110 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC17.04■□□□□ 0.32
COL6A2P12110 NDUFV2-AS1-203ENST00000608008 779 ntBASIC17.04■□□□□ 0.32
COL6A2P12110 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC17.04■□□□□ 0.32
COL6A2P12110 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A2P12110 AC132938.5-201ENST00000624980 1813 ntBASIC17.04■□□□□ 0.32
COL6A2P12110 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
COL6A2P12110 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC17.04■□□□□ 0.32
COL6A2P12110 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A2P12110 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC17.04■□□□□ 0.32
COL6A2P12110 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms