Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC16.88■□□□□ 0.29
SIX3O95343 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.88■□□□□ 0.29
SIX3O95343 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SIX3O95343 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
SIX3O95343 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SIX3O95343 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SIX3O95343 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC16.88■□□□□ 0.29
SIX3O95343 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SIX3O95343 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
SIX3O95343 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SIX3O95343 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SIX3O95343 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.87■□□□□ 0.29
SIX3O95343 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SIX3O95343 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SIX3O95343 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SIX3O95343 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SIX3O95343 CCS-201ENST00000310190 942 ntTSL 5 BASIC16.87■□□□□ 0.29
SIX3O95343 CD9-202ENST00000382515 1229 ntTSL 5 BASIC16.87■□□□□ 0.29
SIX3O95343 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC16.87■□□□□ 0.29
SIX3O95343 KLF4P1-201ENST00000412782 1185 ntBASIC16.87■□□□□ 0.29
SIX3O95343 DRAXINP1-201ENST00000437611 948 ntBASIC16.87■□□□□ 0.29
SIX3O95343 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC16.87■□□□□ 0.29
SIX3O95343 FAM210CP-201ENST00000445714 574 ntBASIC16.87■□□□□ 0.29
SIX3O95343 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC16.87■□□□□ 0.29
SIX3O95343 CIB2-208ENST00000560618 804 ntTSL 2 BASIC16.87■□□□□ 0.29
SIX3O95343 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC16.87■□□□□ 0.29
SIX3O95343 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
SIX3O95343 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
SIX3O95343 BNIP3P18-201ENST00000593976 575 ntBASIC16.87■□□□□ 0.29
SIX3O95343 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
SIX3O95343 AC010331.1-201ENST00000611423 582 ntBASIC16.87■□□□□ 0.29
SIX3O95343 AC073592.5-201ENST00000624854 528 ntBASIC16.87■□□□□ 0.29
SIX3O95343 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
SIX3O95343 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.87■□□□□ 0.29
SIX3O95343 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC16.87■□□□□ 0.29
SIX3O95343 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SIX3O95343 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.87■□□□□ 0.29
SIX3O95343 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SIX3O95343 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC16.87■□□□□ 0.29
SIX3O95343 OR6D1P-203ENST00000641209 4860 ntBASIC16.87■□□□□ 0.29
SIX3O95343 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SIX3O95343 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
SIX3O95343 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.87■□□□□ 0.29
SIX3O95343 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SIX3O95343 NSUN5P1-202ENST00000421140 1535 ntBASIC16.86■□□□□ 0.29
SIX3O95343 NSUN5P2-203ENST00000457352 1529 ntBASIC16.86■□□□□ 0.29
SIX3O95343 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SIX3O95343 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SIX3O95343 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC16.86■□□□□ 0.29
SIX3O95343 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SIX3O95343 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC16.86■□□□□ 0.29
SIX3O95343 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SIX3O95343 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SIX3O95343 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC16.86■□□□□ 0.29
SIX3O95343 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
SIX3O95343 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SIX3O95343 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
SIX3O95343 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC16.86■□□□□ 0.29
SIX3O95343 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC16.86■□□□□ 0.29
SIX3O95343 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SIX3O95343 AC003669.1-201ENST00000334569 611 ntBASIC16.86■□□□□ 0.29
SIX3O95343 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SIX3O95343 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC16.86■□□□□ 0.29
SIX3O95343 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC16.86■□□□□ 0.29
SIX3O95343 KRT17P6-201ENST00000453795 1220 ntBASIC16.86■□□□□ 0.29
SIX3O95343 MINOS1P3-201ENST00000457048 203 ntBASIC16.86■□□□□ 0.29
SIX3O95343 CDV3-207ENST00000508481 661 ntTSL 3 BASIC16.86■□□□□ 0.29
SIX3O95343 AC096582.2-201ENST00000510860 516 ntBASIC16.86■□□□□ 0.29
SIX3O95343 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC16.86■□□□□ 0.29
SIX3O95343 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC16.86■□□□□ 0.29
SIX3O95343 Z69720.1-201ENST00000601483 472 ntBASIC16.86■□□□□ 0.29
SIX3O95343 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC16.86■□□□□ 0.29
SIX3O95343 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SIX3O95343 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
SIX3O95343 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC16.86■□□□□ 0.29
SIX3O95343 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
SIX3O95343 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SIX3O95343 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SIX3O95343 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SIX3O95343 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
SIX3O95343 IER3-202ENST00000376377 1350 ntBASIC16.86■□□□□ 0.29
SIX3O95343 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC16.86■□□□□ 0.29
SIX3O95343 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SIX3O95343 INTS4P1-201ENST00000438455 1935 ntBASIC16.86■□□□□ 0.29
SIX3O95343 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SIX3O95343 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
SIX3O95343 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
SIX3O95343 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SIX3O95343 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC16.86■□□□□ 0.29
SIX3O95343 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SIX3O95343 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
SIX3O95343 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SIX3O95343 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
SIX3O95343 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SIX3O95343 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC16.85■□□□□ 0.29
SIX3O95343 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SIX3O95343 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SIX3O95343 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SIX3O95343 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SIX3O95343 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 73.6 ms