Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC15.31■□□□□ 0.04
SGCEO43556 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SGCEO43556 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SGCEO43556 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SGCEO43556 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC15.31■□□□□ 0.04
SGCEO43556 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC15.31■□□□□ 0.04
SGCEO43556 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC15.31■□□□□ 0.04
SGCEO43556 BNIP3P18-201ENST00000593976 575 ntBASIC15.31■□□□□ 0.04
SGCEO43556 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SGCEO43556 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SGCEO43556 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC15.31■□□□□ 0.04
SGCEO43556 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SGCEO43556 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC15.31■□□□□ 0.04
SGCEO43556 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC15.31■□□□□ 0.04
SGCEO43556 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC15.31■□□□□ 0.04
SGCEO43556 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SGCEO43556 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC15.31■□□□□ 0.04
SGCEO43556 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
SGCEO43556 AL049757.1-201ENST00000616842 1596 ntBASIC15.31■□□□□ 0.04
SGCEO43556 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SGCEO43556 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SGCEO43556 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SGCEO43556 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
SGCEO43556 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
SGCEO43556 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC15.31■□□□□ 0.04
SGCEO43556 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SGCEO43556 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC15.31■□□□□ 0.04
SGCEO43556 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
SGCEO43556 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
SGCEO43556 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
SGCEO43556 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SGCEO43556 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SGCEO43556 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
SGCEO43556 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SGCEO43556 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SGCEO43556 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SGCEO43556 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SGCEO43556 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SGCEO43556 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC15.3■□□□□ 0.04
SGCEO43556 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SGCEO43556 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
SGCEO43556 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC15.3■□□□□ 0.04
SGCEO43556 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC15.3■□□□□ 0.04
SGCEO43556 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SGCEO43556 KRT8P10-201ENST00000450021 1447 ntBASIC15.3■□□□□ 0.04
SGCEO43556 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC15.3■□□□□ 0.04
SGCEO43556 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC15.3■□□□□ 0.04
SGCEO43556 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SGCEO43556 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC15.3■□□□□ 0.04
SGCEO43556 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
SGCEO43556 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC15.3■□□□□ 0.04
SGCEO43556 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
SGCEO43556 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC15.3■□□□□ 0.04
SGCEO43556 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SGCEO43556 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC15.3■□□□□ 0.04
SGCEO43556 TK1-204ENST00000590430 683 ntTSL 3 BASIC15.3■□□□□ 0.04
SGCEO43556 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC15.3■□□□□ 0.04
SGCEO43556 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC15.3■□□□□ 0.04
SGCEO43556 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SGCEO43556 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SGCEO43556 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
SGCEO43556 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
SGCEO43556 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SGCEO43556 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SGCEO43556 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC15.29■□□□□ 0.04
SGCEO43556 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC15.29■□□□□ 0.04
SGCEO43556 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
SGCEO43556 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC15.29■□□□□ 0.04
SGCEO43556 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
SGCEO43556 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
SGCEO43556 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC15.29■□□□□ 0.04
SGCEO43556 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC15.29■□□□□ 0.04
SGCEO43556 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC15.29■□□□□ 0.04
SGCEO43556 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
SGCEO43556 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SGCEO43556 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
SGCEO43556 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC15.29■□□□□ 0.04
SGCEO43556 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC15.29■□□□□ 0.04
SGCEO43556 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC15.29■□□□□ 0.04
SGCEO43556 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SGCEO43556 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC15.29■□□□□ 0.04
SGCEO43556 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC15.29■□□□□ 0.04
SGCEO43556 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
SGCEO43556 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SGCEO43556 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SGCEO43556 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SGCEO43556 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SGCEO43556 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
SGCEO43556 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC15.29■□□□□ 0.04
SGCEO43556 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC15.29■□□□□ 0.04
SGCEO43556 POM121L3P-201ENST00000419331 1163 ntBASIC15.29■□□□□ 0.04
SGCEO43556 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
SGCEO43556 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC15.29■□□□□ 0.04
SGCEO43556 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SGCEO43556 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC15.29■□□□□ 0.04
SGCEO43556 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC15.29■□□□□ 0.04
SGCEO43556 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SGCEO43556 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SGCEO43556 AC099336.1-202ENST00000602961 463 ntBASIC15.29■□□□□ 0.04
SGCEO43556 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms