Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC21.69■■□□□ 1.06
NPHP1O15259 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
NPHP1O15259 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
NPHP1O15259 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC21.68■■□□□ 1.06
NPHP1O15259 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC21.68■■□□□ 1.06
NPHP1O15259 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
NPHP1O15259 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
NPHP1O15259 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
NPHP1O15259 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
NPHP1O15259 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC21.68■■□□□ 1.06
NPHP1O15259 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC21.68■■□□□ 1.06
NPHP1O15259 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC21.68■■□□□ 1.06
NPHP1O15259 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC21.68■■□□□ 1.06
NPHP1O15259 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
NPHP1O15259 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
NPHP1O15259 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
NPHP1O15259 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
NPHP1O15259 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC21.68■■□□□ 1.06
NPHP1O15259 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
NPHP1O15259 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
NPHP1O15259 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
NPHP1O15259 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
NPHP1O15259 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
NPHP1O15259 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
NPHP1O15259 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC21.68■■□□□ 1.06
NPHP1O15259 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
NPHP1O15259 AP000997.3-201ENST00000623333 2250 ntBASIC21.68■■□□□ 1.06
NPHP1O15259 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
NPHP1O15259 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC21.68■■□□□ 1.06
NPHP1O15259 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
NPHP1O15259 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
NPHP1O15259 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC21.68■■□□□ 1.06
NPHP1O15259 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC21.68■■□□□ 1.06
NPHP1O15259 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
NPHP1O15259 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
NPHP1O15259 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
NPHP1O15259 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC21.67■■□□□ 1.06
NPHP1O15259 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP1O15259 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP1O15259 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC21.67■■□□□ 1.06
NPHP1O15259 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP1O15259 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP1O15259 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP1O15259 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC21.67■■□□□ 1.06
NPHP1O15259 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP1O15259 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP1O15259 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC21.67■■□□□ 1.06
NPHP1O15259 FAM185BP-201ENST00000443595 716 ntBASIC21.67■■□□□ 1.06
NPHP1O15259 HLA-J-203ENST00000494367 1087 ntBASIC21.67■■□□□ 1.06
NPHP1O15259 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
NPHP1O15259 GREM1-201ENST00000560677 623 ntTSL 4 BASIC21.67■■□□□ 1.06
NPHP1O15259 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC21.67■■□□□ 1.06
NPHP1O15259 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC21.67■■□□□ 1.06
NPHP1O15259 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP1O15259 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC21.67■■□□□ 1.06
NPHP1O15259 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP1O15259 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP1O15259 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP1O15259 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
NPHP1O15259 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
NPHP1O15259 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
NPHP1O15259 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
NPHP1O15259 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
NPHP1O15259 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
NPHP1O15259 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
NPHP1O15259 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC21.66■■□□□ 1.06
NPHP1O15259 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
NPHP1O15259 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
NPHP1O15259 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
NPHP1O15259 COX20P2-201ENST00000452636 358 ntBASIC21.66■■□□□ 1.06
NPHP1O15259 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
NPHP1O15259 GATB-205ENST00000508611 605 ntTSL 2 BASIC21.66■■□□□ 1.06
NPHP1O15259 AC109322.1-201ENST00000524499 1264 ntBASIC21.66■■□□□ 1.06
NPHP1O15259 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC21.66■■□□□ 1.06
NPHP1O15259 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
NPHP1O15259 AC239800.4-201ENST00000603712 296 ntBASIC21.66■■□□□ 1.06
NPHP1O15259 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC21.66■■□□□ 1.06
NPHP1O15259 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC21.66■■□□□ 1.06
NPHP1O15259 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
NPHP1O15259 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
NPHP1O15259 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
NPHP1O15259 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
NPHP1O15259 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
NPHP1O15259 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
NPHP1O15259 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NPHP1O15259 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC21.65■■□□□ 1.06
NPHP1O15259 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NPHP1O15259 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC21.65■■□□□ 1.06
NPHP1O15259 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
NPHP1O15259 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
NPHP1O15259 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC21.65■■□□□ 1.06
NPHP1O15259 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
NPHP1O15259 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
NPHP1O15259 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
NPHP1O15259 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
NPHP1O15259 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
NPHP1O15259 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NPHP1O15259 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NPHP1O15259 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NPHP1O15259 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms