Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
IFT140Q96RY7 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
IFT140Q96RY7 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC28.15■■■□□ 2.1
IFT140Q96RY7 AC234783.1-201ENST00000441761 496 ntBASIC28.15■■■□□ 2.1
IFT140Q96RY7 DOC2GP-202ENST00000514950 1163 ntBASIC28.15■■■□□ 2.1
IFT140Q96RY7 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC28.15■■■□□ 2.1
IFT140Q96RY7 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC28.15■■■□□ 2.1
IFT140Q96RY7 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC28.15■■■□□ 2.1
IFT140Q96RY7 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
IFT140Q96RY7 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
IFT140Q96RY7 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC28.14■■■□□ 2.1
IFT140Q96RY7 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC28.14■■■□□ 2.09
IFT140Q96RY7 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC28.14■■■□□ 2.09
IFT140Q96RY7 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC28.14■■■□□ 2.09
IFT140Q96RY7 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC28.14■■■□□ 2.09
IFT140Q96RY7 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC28.14■■■□□ 2.09
IFT140Q96RY7 AL512361.1-201ENST00000554200 418 ntBASIC28.14■■■□□ 2.09
IFT140Q96RY7 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC28.14■■■□□ 2.09
IFT140Q96RY7 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC28.14■■■□□ 2.09
IFT140Q96RY7 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC28.14■■■□□ 2.09
IFT140Q96RY7 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC28.14■■■□□ 2.09
IFT140Q96RY7 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC28.13■■■□□ 2.09
IFT140Q96RY7 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
IFT140Q96RY7 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
IFT140Q96RY7 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC28.13■■■□□ 2.09
IFT140Q96RY7 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC28.13■■■□□ 2.09
IFT140Q96RY7 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
IFT140Q96RY7 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
IFT140Q96RY7 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
IFT140Q96RY7 ANKRD19P-201ENST00000338192 862 ntBASIC28.13■■■□□ 2.09
IFT140Q96RY7 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC28.13■■■□□ 2.09
IFT140Q96RY7 HIST1H2BPS3-201ENST00000419683 341 ntBASIC28.13■■■□□ 2.09
IFT140Q96RY7 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC28.13■■■□□ 2.09
IFT140Q96RY7 MTND6P24-201ENST00000440466 518 ntBASIC28.13■■■□□ 2.09
IFT140Q96RY7 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC28.13■■■□□ 2.09
IFT140Q96RY7 AL079307.3-201ENST00000556114 283 ntBASIC28.13■■■□□ 2.09
IFT140Q96RY7 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC28.13■■■□□ 2.09
IFT140Q96RY7 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC28.13■■■□□ 2.09
IFT140Q96RY7 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC28.13■■■□□ 2.09
IFT140Q96RY7 TOP3BP1-201ENST00000420768 1380 ntBASIC28.13■■■□□ 2.09
IFT140Q96RY7 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
IFT140Q96RY7 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
IFT140Q96RY7 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
IFT140Q96RY7 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC28.12■■■□□ 2.09
IFT140Q96RY7 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
IFT140Q96RY7 AP000997.3-201ENST00000623333 2250 ntBASIC28.12■■■□□ 2.09
IFT140Q96RY7 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
IFT140Q96RY7 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC28.12■■■□□ 2.09
IFT140Q96RY7 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC28.12■■■□□ 2.09
IFT140Q96RY7 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
IFT140Q96RY7 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
IFT140Q96RY7 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC28.12■■■□□ 2.09
IFT140Q96RY7 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC28.12■■■□□ 2.09
IFT140Q96RY7 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC28.12■■■□□ 2.09
IFT140Q96RY7 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
IFT140Q96RY7 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
IFT140Q96RY7 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC28.12■■■□□ 2.09
IFT140Q96RY7 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC28.12■■■□□ 2.09
IFT140Q96RY7 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC28.12■■■□□ 2.09
IFT140Q96RY7 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
IFT140Q96RY7 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
IFT140Q96RY7 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC28.11■■■□□ 2.09
IFT140Q96RY7 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
IFT140Q96RY7 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC28.11■■■□□ 2.09
IFT140Q96RY7 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC28.11■■■□□ 2.09
IFT140Q96RY7 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
IFT140Q96RY7 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC28.11■■■□□ 2.09
IFT140Q96RY7 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC28.11■■■□□ 2.09
IFT140Q96RY7 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC28.11■■■□□ 2.09
IFT140Q96RY7 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
IFT140Q96RY7 PRYP6-201ENST00000514804 343 ntBASIC28.11■■■□□ 2.09
IFT140Q96RY7 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC28.11■■■□□ 2.09
IFT140Q96RY7 MIR6787-201ENST00000616675 61 ntBASIC28.11■■■□□ 2.09
IFT140Q96RY7 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC28.11■■■□□ 2.09
IFT140Q96RY7 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC28.11■■■□□ 2.09
IFT140Q96RY7 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
IFT140Q96RY7 EFS-203ENST00000429593 2610 ntTSL 2 BASIC28.11■■■□□ 2.09
IFT140Q96RY7 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC28.11■■■□□ 2.09
IFT140Q96RY7 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC28.11■■■□□ 2.09
IFT140Q96RY7 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
IFT140Q96RY7 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC28.1■■■□□ 2.09
IFT140Q96RY7 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC28.1■■■□□ 2.09
IFT140Q96RY7 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC28.1■■■□□ 2.09
IFT140Q96RY7 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
IFT140Q96RY7 CD81-207ENST00000481687 890 ntTSL 2 BASIC28.1■■■□□ 2.09
IFT140Q96RY7 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC28.1■■■□□ 2.09
IFT140Q96RY7 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC28.1■■■□□ 2.09
IFT140Q96RY7 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC28.1■■■□□ 2.09
IFT140Q96RY7 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC28.1■■■□□ 2.09
IFT140Q96RY7 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC28.1■■■□□ 2.09
IFT140Q96RY7 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC28.1■■■□□ 2.09
IFT140Q96RY7 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
IFT140Q96RY7 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC28.1■■■□□ 2.09
IFT140Q96RY7 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC28.1■■■□□ 2.09
IFT140Q96RY7 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
IFT140Q96RY7 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
IFT140Q96RY7 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
IFT140Q96RY7 AC116562.4-201ENST00000641316 2276 ntBASIC28.1■■■□□ 2.09
IFT140Q96RY7 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC28.1■■■□□ 2.09
IFT140Q96RY7 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms