Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
CHFRQ96EP1 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
CHFRQ96EP1 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CHFRQ96EP1 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CHFRQ96EP1 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC17.49■□□□□ 0.39
CHFRQ96EP1 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHFRQ96EP1 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHFRQ96EP1 LYSMD4-203ENST00000378904 2122 ntBASIC17.49■□□□□ 0.39
CHFRQ96EP1 AL627223.1-201ENST00000416693 442 ntBASIC17.49■□□□□ 0.39
CHFRQ96EP1 AC140658.5-201ENST00000438532 169 ntBASIC17.49■□□□□ 0.39
CHFRQ96EP1 TIMM8BP1-201ENST00000452384 211 ntBASIC17.49■□□□□ 0.39
CHFRQ96EP1 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
CHFRQ96EP1 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
CHFRQ96EP1 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC17.49■□□□□ 0.39
CHFRQ96EP1 MMP17-203ENST00000535004 719 ntTSL 3 BASIC17.49■□□□□ 0.39
CHFRQ96EP1 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CHFRQ96EP1 LINC01451-201ENST00000623792 534 ntBASIC17.49■□□□□ 0.39
CHFRQ96EP1 LINC00628-201ENST00000628516 1289 ntBASIC17.49■□□□□ 0.39
CHFRQ96EP1 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHFRQ96EP1 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC17.49■□□□□ 0.39
CHFRQ96EP1 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHFRQ96EP1 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
CHFRQ96EP1 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHFRQ96EP1 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CHFRQ96EP1 AC138932.1-201ENST00000534164 6830 ntBASIC17.49■□□□□ 0.39
CHFRQ96EP1 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC17.49■□□□□ 0.39
CHFRQ96EP1 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHFRQ96EP1 ABALON-201ENST00000629058 1903 ntBASIC17.49■□□□□ 0.39
CHFRQ96EP1 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CHFRQ96EP1 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC17.48■□□□□ 0.39
CHFRQ96EP1 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CHFRQ96EP1 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHFRQ96EP1 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CHFRQ96EP1 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC17.48■□□□□ 0.39
CHFRQ96EP1 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
CHFRQ96EP1 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CHFRQ96EP1 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.48■□□□□ 0.39
CHFRQ96EP1 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CHFRQ96EP1 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHFRQ96EP1 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
CHFRQ96EP1 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHFRQ96EP1 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CHFRQ96EP1 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC17.48■□□□□ 0.39
CHFRQ96EP1 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CHFRQ96EP1 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC17.48■□□□□ 0.39
CHFRQ96EP1 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CHFRQ96EP1 AC011467.4-201ENST00000594891 528 ntBASIC17.48■□□□□ 0.39
CHFRQ96EP1 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC17.48■□□□□ 0.39
CHFRQ96EP1 AC009093.7-201ENST00000623853 1223 ntBASIC17.48■□□□□ 0.39
CHFRQ96EP1 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHFRQ96EP1 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC17.48■□□□□ 0.39
CHFRQ96EP1 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC17.48■□□□□ 0.39
CHFRQ96EP1 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
CHFRQ96EP1 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
CHFRQ96EP1 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHFRQ96EP1 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHFRQ96EP1 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHFRQ96EP1 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHFRQ96EP1 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.47■□□□□ 0.39
CHFRQ96EP1 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CHFRQ96EP1 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHFRQ96EP1 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CHFRQ96EP1 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC17.47■□□□□ 0.39
CHFRQ96EP1 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CHFRQ96EP1 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHFRQ96EP1 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.47■□□□□ 0.39
CHFRQ96EP1 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHFRQ96EP1 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHFRQ96EP1 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHFRQ96EP1 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHFRQ96EP1 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CHFRQ96EP1 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHFRQ96EP1 AL035633.1-201ENST00000406139 838 ntBASIC17.47■□□□□ 0.39
CHFRQ96EP1 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC17.47■□□□□ 0.39
CHFRQ96EP1 SLBP-205ENST00000488267 987 ntTSL 2 BASIC17.47■□□□□ 0.39
CHFRQ96EP1 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
CHFRQ96EP1 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC17.47■□□□□ 0.39
CHFRQ96EP1 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC17.47■□□□□ 0.39
CHFRQ96EP1 AL096865.1-201ENST00000606796 927 ntBASIC17.47■□□□□ 0.39
CHFRQ96EP1 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC17.47■□□□□ 0.39
CHFRQ96EP1 AC026120.1-201ENST00000611536 926 ntBASIC17.47■□□□□ 0.39
CHFRQ96EP1 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHFRQ96EP1 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.47■□□□□ 0.39
CHFRQ96EP1 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHFRQ96EP1 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
CHFRQ96EP1 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC17.47■□□□□ 0.39
CHFRQ96EP1 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CHFRQ96EP1 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHFRQ96EP1 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHFRQ96EP1 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
CHFRQ96EP1 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.47■□□□□ 0.39
CHFRQ96EP1 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC17.47■□□□□ 0.39
CHFRQ96EP1 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CHFRQ96EP1 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC17.46■□□□□ 0.39
CHFRQ96EP1 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CHFRQ96EP1 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CHFRQ96EP1 AC012317.2-201ENST00000623305 2251 ntBASIC17.46■□□□□ 0.39
CHFRQ96EP1 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
CHFRQ96EP1 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CHFRQ96EP1 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms