Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC11.46□□□□□ -0.57
ALMS1Q8TCU4 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
ALMS1Q8TCU4 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
ALMS1Q8TCU4 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
ALMS1Q8TCU4 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
ALMS1Q8TCU4 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
ALMS1Q8TCU4 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC11.46□□□□□ -0.58
ALMS1Q8TCU4 MXI1-205ENST00000393134 889 ntTSL 2 BASIC11.46□□□□□ -0.58
ALMS1Q8TCU4 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC11.46□□□□□ -0.58
ALMS1Q8TCU4 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC11.46□□□□□ -0.58
ALMS1Q8TCU4 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC11.46□□□□□ -0.58
ALMS1Q8TCU4 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC11.46□□□□□ -0.58
ALMS1Q8TCU4 AL139099.5-201ENST00000635274 300 ntBASIC11.46□□□□□ -0.58
ALMS1Q8TCU4 AL109936.8-201ENST00000641772 604 ntBASIC11.46□□□□□ -0.58
ALMS1Q8TCU4 SLC22A20-204ENST00000530038 1673 ntBASIC11.46□□□□□ -0.58
ALMS1Q8TCU4 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC11.46□□□□□ -0.58
ALMS1Q8TCU4 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC11.46□□□□□ -0.58
ALMS1Q8TCU4 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
ALMS1Q8TCU4 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC11.46□□□□□ -0.58
ALMS1Q8TCU4 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC11.46□□□□□ -0.58
ALMS1Q8TCU4 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
ALMS1Q8TCU4 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC11.46□□□□□ -0.58
ALMS1Q8TCU4 AL355994.2-201ENST00000447882 704 ntBASIC11.46□□□□□ -0.58
ALMS1Q8TCU4 PRYP6-201ENST00000514804 343 ntBASIC11.46□□□□□ -0.58
ALMS1Q8TCU4 RNA5SP423-201ENST00000517127 109 ntBASIC11.46□□□□□ -0.58
ALMS1Q8TCU4 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC11.46□□□□□ -0.58
ALMS1Q8TCU4 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
ALMS1Q8TCU4 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC11.45□□□□□ -0.58
ALMS1Q8TCU4 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC11.45□□□□□ -0.58
ALMS1Q8TCU4 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
ALMS1Q8TCU4 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC11.45□□□□□ -0.58
ALMS1Q8TCU4 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
ALMS1Q8TCU4 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC11.45□□□□□ -0.58
ALMS1Q8TCU4 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC11.45□□□□□ -0.58
ALMS1Q8TCU4 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC11.45□□□□□ -0.58
ALMS1Q8TCU4 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
ALMS1Q8TCU4 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
ALMS1Q8TCU4 PARP8-218ENST00000513738 596 ntTSL 4 BASIC11.45□□□□□ -0.58
ALMS1Q8TCU4 PRR29-204ENST00000577953 565 ntTSL 4 BASIC11.45□□□□□ -0.58
ALMS1Q8TCU4 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
ALMS1Q8TCU4 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
ALMS1Q8TCU4 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC11.45□□□□□ -0.58
ALMS1Q8TCU4 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
ALMS1Q8TCU4 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC11.45□□□□□ -0.58
ALMS1Q8TCU4 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
ALMS1Q8TCU4 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC11.45□□□□□ -0.58
ALMS1Q8TCU4 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
ALMS1Q8TCU4 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC11.45□□□□□ -0.58
ALMS1Q8TCU4 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
ALMS1Q8TCU4 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
ALMS1Q8TCU4 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC11.45□□□□□ -0.58
ALMS1Q8TCU4 CTBP2P3-201ENST00000585629 1255 ntBASIC11.45□□□□□ -0.58
ALMS1Q8TCU4 SLC7A15P-201ENST00000424028 1363 ntBASIC11.45□□□□□ -0.58
ALMS1Q8TCU4 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC11.45□□□□□ -0.58
ALMS1Q8TCU4 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC11.45□□□□□ -0.58
ALMS1Q8TCU4 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
ALMS1Q8TCU4 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
ALMS1Q8TCU4 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC11.45□□□□□ -0.58
ALMS1Q8TCU4 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
ALMS1Q8TCU4 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
ALMS1Q8TCU4 RNU1-129P-201ENST00000384064 167 ntBASIC11.45□□□□□ -0.58
ALMS1Q8TCU4 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC11.45□□□□□ -0.58
ALMS1Q8TCU4 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC11.45□□□□□ -0.58
ALMS1Q8TCU4 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
ALMS1Q8TCU4 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
ALMS1Q8TCU4 AL079307.3-201ENST00000556114 283 ntBASIC11.45□□□□□ -0.58
ALMS1Q8TCU4 MPI-209ENST00000564003 1195 ntTSL 2 BASIC11.45□□□□□ -0.58
ALMS1Q8TCU4 U1.21-201ENST00000580816 167 ntBASIC11.45□□□□□ -0.58
ALMS1Q8TCU4 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
ALMS1Q8TCU4 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
ALMS1Q8TCU4 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC11.44□□□□□ -0.58
ALMS1Q8TCU4 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
ALMS1Q8TCU4 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
ALMS1Q8TCU4 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
ALMS1Q8TCU4 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC11.44□□□□□ -0.58
ALMS1Q8TCU4 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC11.44□□□□□ -0.58
ALMS1Q8TCU4 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
ALMS1Q8TCU4 RPL37AP1-201ENST00000412502 279 ntBASIC11.44□□□□□ -0.58
ALMS1Q8TCU4 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC11.44□□□□□ -0.58
ALMS1Q8TCU4 MIR6775-201ENST00000617557 69 ntBASIC11.44□□□□□ -0.58
ALMS1Q8TCU4 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
ALMS1Q8TCU4 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC11.44□□□□□ -0.58
ALMS1Q8TCU4 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
ALMS1Q8TCU4 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC11.44□□□□□ -0.58
ALMS1Q8TCU4 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
ALMS1Q8TCU4 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
ALMS1Q8TCU4 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC11.44□□□□□ -0.58
ALMS1Q8TCU4 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC11.44□□□□□ -0.58
ALMS1Q8TCU4 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
ALMS1Q8TCU4 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC11.44□□□□□ -0.58
ALMS1Q8TCU4 AP000997.3-201ENST00000623333 2250 ntBASIC11.44□□□□□ -0.58
ALMS1Q8TCU4 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
ALMS1Q8TCU4 LINC00895-201ENST00000629028 1637 ntBASIC11.44□□□□□ -0.58
ALMS1Q8TCU4 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
ALMS1Q8TCU4 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
ALMS1Q8TCU4 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC11.44□□□□□ -0.58
ALMS1Q8TCU4 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
ALMS1Q8TCU4 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC11.44□□□□□ -0.58
ALMS1Q8TCU4 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC11.44□□□□□ -0.58
ALMS1Q8TCU4 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC11.44□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms