Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
ZNF540Q8NDQ6 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ZNF540Q8NDQ6 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ZNF540Q8NDQ6 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC16.07■□□□□ 0.16
ZNF540Q8NDQ6 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ZNF540Q8NDQ6 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
ZNF540Q8NDQ6 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC16.07■□□□□ 0.16
ZNF540Q8NDQ6 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
ZNF540Q8NDQ6 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
ZNF540Q8NDQ6 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
ZNF540Q8NDQ6 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC16.07■□□□□ 0.16
ZNF540Q8NDQ6 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
ZNF540Q8NDQ6 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
ZNF540Q8NDQ6 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
ZNF540Q8NDQ6 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC16.06■□□□□ 0.16
ZNF540Q8NDQ6 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
ZNF540Q8NDQ6 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC16.06■□□□□ 0.16
ZNF540Q8NDQ6 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
ZNF540Q8NDQ6 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
ZNF540Q8NDQ6 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
ZNF540Q8NDQ6 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC16.06■□□□□ 0.16
ZNF540Q8NDQ6 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
ZNF540Q8NDQ6 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
ZNF540Q8NDQ6 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC16.06■□□□□ 0.16
ZNF540Q8NDQ6 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC16.06■□□□□ 0.16
ZNF540Q8NDQ6 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC16.06■□□□□ 0.16
ZNF540Q8NDQ6 SAPCD2P2-201ENST00000431719 1174 ntBASIC16.06■□□□□ 0.16
ZNF540Q8NDQ6 YBX1P2-201ENST00000489612 999 ntBASIC16.06■□□□□ 0.16
ZNF540Q8NDQ6 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC16.06■□□□□ 0.16
ZNF540Q8NDQ6 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC16.06■□□□□ 0.16
ZNF540Q8NDQ6 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC16.06■□□□□ 0.16
ZNF540Q8NDQ6 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC16.06■□□□□ 0.16
ZNF540Q8NDQ6 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
ZNF540Q8NDQ6 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
ZNF540Q8NDQ6 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
ZNF540Q8NDQ6 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC16.06■□□□□ 0.16
ZNF540Q8NDQ6 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
ZNF540Q8NDQ6 AC006449.5-201ENST00000610658 2098 ntBASIC16.06■□□□□ 0.16
ZNF540Q8NDQ6 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
ZNF540Q8NDQ6 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
ZNF540Q8NDQ6 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
ZNF540Q8NDQ6 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ZNF540Q8NDQ6 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC16.05■□□□□ 0.16
ZNF540Q8NDQ6 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC16.05■□□□□ 0.16
ZNF540Q8NDQ6 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
ZNF540Q8NDQ6 AC116353.5-201ENST00000638148 1699 ntBASIC16.05■□□□□ 0.16
ZNF540Q8NDQ6 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ZNF540Q8NDQ6 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC16.05■□□□□ 0.16
ZNF540Q8NDQ6 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ZNF540Q8NDQ6 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
ZNF540Q8NDQ6 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
ZNF540Q8NDQ6 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC16.05■□□□□ 0.16
ZNF540Q8NDQ6 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ZNF540Q8NDQ6 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC16.05■□□□□ 0.16
ZNF540Q8NDQ6 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ZNF540Q8NDQ6 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ZNF540Q8NDQ6 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
ZNF540Q8NDQ6 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
ZNF540Q8NDQ6 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC16.05■□□□□ 0.16
ZNF540Q8NDQ6 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC16.05■□□□□ 0.16
ZNF540Q8NDQ6 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC16.05■□□□□ 0.16
ZNF540Q8NDQ6 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
ZNF540Q8NDQ6 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
ZNF540Q8NDQ6 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
ZNF540Q8NDQ6 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC16.05■□□□□ 0.16
ZNF540Q8NDQ6 DBP-204ENST00000599385 709 ntTSL 3 BASIC16.05■□□□□ 0.16
ZNF540Q8NDQ6 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC16.05■□□□□ 0.16
ZNF540Q8NDQ6 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ZNF540Q8NDQ6 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ZNF540Q8NDQ6 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ZNF540Q8NDQ6 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC16.05■□□□□ 0.16
ZNF540Q8NDQ6 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
ZNF540Q8NDQ6 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
ZNF540Q8NDQ6 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.05■□□□□ 0.16
ZNF540Q8NDQ6 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
ZNF540Q8NDQ6 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms