Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC22.7■■□□□ 1.22
USP54Q70EL1 BOC-212ENST00000485230 2173 ntTSL 2 BASIC22.69■■□□□ 1.22
USP54Q70EL1 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC22.69■■□□□ 1.22
USP54Q70EL1 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC22.69■■□□□ 1.22
USP54Q70EL1 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
USP54Q70EL1 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC22.69■■□□□ 1.22
USP54Q70EL1 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC22.69■■□□□ 1.22
USP54Q70EL1 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC22.69■■□□□ 1.22
USP54Q70EL1 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC22.69■■□□□ 1.22
USP54Q70EL1 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC22.69■■□□□ 1.22
USP54Q70EL1 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC22.69■■□□□ 1.22
USP54Q70EL1 AC007967.4-201ENST00000614700 386 ntBASIC22.69■■□□□ 1.22
USP54Q70EL1 SPDYE12P-201ENST00000618416 771 ntBASIC22.69■■□□□ 1.22
USP54Q70EL1 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC22.69■■□□□ 1.22
USP54Q70EL1 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC22.69■■□□□ 1.22
USP54Q70EL1 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
USP54Q70EL1 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
USP54Q70EL1 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC22.69■■□□□ 1.22
USP54Q70EL1 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC22.69■■□□□ 1.22
USP54Q70EL1 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
USP54Q70EL1 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC22.68■■□□□ 1.22
USP54Q70EL1 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC22.68■■□□□ 1.22
USP54Q70EL1 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC22.68■■□□□ 1.22
USP54Q70EL1 POLD4-211ENST00000539074 714 ntTSL 3 BASIC22.68■■□□□ 1.22
USP54Q70EL1 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC22.68■■□□□ 1.22
USP54Q70EL1 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
USP54Q70EL1 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC22.68■■□□□ 1.22
USP54Q70EL1 RN7SL204P-201ENST00000582831 262 ntBASIC22.68■■□□□ 1.22
USP54Q70EL1 WT1-AS_2.1-201ENST00000613208 137 ntBASIC22.68■■□□□ 1.22
USP54Q70EL1 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC22.68■■□□□ 1.22
USP54Q70EL1 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC22.68■■□□□ 1.22
USP54Q70EL1 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
USP54Q70EL1 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC22.68■■□□□ 1.22
USP54Q70EL1 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC22.68■■□□□ 1.22
USP54Q70EL1 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
USP54Q70EL1 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
USP54Q70EL1 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC22.68■■□□□ 1.22
USP54Q70EL1 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC22.68■■□□□ 1.22
USP54Q70EL1 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC22.68■■□□□ 1.22
USP54Q70EL1 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC22.68■■□□□ 1.22
USP54Q70EL1 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC22.68■■□□□ 1.22
USP54Q70EL1 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC22.68■■□□□ 1.22
USP54Q70EL1 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC22.68■■□□□ 1.22
USP54Q70EL1 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC22.68■■□□□ 1.22
USP54Q70EL1 AC008761.3-201ENST00000624803 892 ntBASIC22.68■■□□□ 1.22
USP54Q70EL1 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC22.68■■□□□ 1.22
USP54Q70EL1 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
USP54Q70EL1 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
USP54Q70EL1 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
USP54Q70EL1 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
USP54Q70EL1 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
USP54Q70EL1 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC22.67■■□□□ 1.22
USP54Q70EL1 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
USP54Q70EL1 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC22.67■■□□□ 1.22
USP54Q70EL1 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
USP54Q70EL1 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
USP54Q70EL1 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC22.67■■□□□ 1.22
USP54Q70EL1 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC22.67■■□□□ 1.22
USP54Q70EL1 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC22.67■■□□□ 1.22
USP54Q70EL1 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC22.67■■□□□ 1.22
USP54Q70EL1 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC22.67■■□□□ 1.22
USP54Q70EL1 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
USP54Q70EL1 NOC2LP1-202ENST00000452600 2235 ntBASIC22.67■■□□□ 1.22
USP54Q70EL1 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
USP54Q70EL1 FAM220BP-201ENST00000377689 816 ntBASIC22.67■■□□□ 1.22
USP54Q70EL1 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC22.67■■□□□ 1.22
USP54Q70EL1 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC22.67■■□□□ 1.22
USP54Q70EL1 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC22.67■■□□□ 1.22
USP54Q70EL1 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
USP54Q70EL1 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
USP54Q70EL1 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
USP54Q70EL1 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
USP54Q70EL1 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC22.66■■□□□ 1.22
USP54Q70EL1 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
USP54Q70EL1 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
USP54Q70EL1 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
USP54Q70EL1 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
USP54Q70EL1 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
USP54Q70EL1 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC22.66■■□□□ 1.22
USP54Q70EL1 MIR943-201ENST00000401286 94 ntBASIC22.66■■□□□ 1.22
USP54Q70EL1 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC22.66■■□□□ 1.22
USP54Q70EL1 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC22.66■■□□□ 1.22
USP54Q70EL1 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC22.66■■□□□ 1.22
USP54Q70EL1 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC22.66■■□□□ 1.22
USP54Q70EL1 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC22.66■■□□□ 1.22
USP54Q70EL1 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC22.66■■□□□ 1.22
USP54Q70EL1 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC22.66■■□□□ 1.22
USP54Q70EL1 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
USP54Q70EL1 GNE-204ENST00000539208 2190 ntTSL 2 BASIC22.66■■□□□ 1.22
USP54Q70EL1 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
USP54Q70EL1 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
USP54Q70EL1 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
USP54Q70EL1 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
USP54Q70EL1 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
USP54Q70EL1 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
USP54Q70EL1 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC22.65■■□□□ 1.22
USP54Q70EL1 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
USP54Q70EL1 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
USP54Q70EL1 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC22.65■■□□□ 1.22
USP54Q70EL1 CRB3P1-201ENST00000449338 276 ntBASIC22.65■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 71.5 ms