Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC18.05■□□□□ 0.48
CHD9Q3L8U1 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CHD9Q3L8U1 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.05■□□□□ 0.48
CHD9Q3L8U1 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CHD9Q3L8U1 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC18.05■□□□□ 0.48
CHD9Q3L8U1 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC18.05■□□□□ 0.48
CHD9Q3L8U1 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC18.05■□□□□ 0.48
CHD9Q3L8U1 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC18.05■□□□□ 0.48
CHD9Q3L8U1 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC18.05■□□□□ 0.48
CHD9Q3L8U1 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC18.05■□□□□ 0.48
CHD9Q3L8U1 COX11-210ENST00000639671 696 ntBASIC18.05■□□□□ 0.48
CHD9Q3L8U1 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC18.05■□□□□ 0.48
CHD9Q3L8U1 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CHD9Q3L8U1 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CHD9Q3L8U1 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CHD9Q3L8U1 AP3S2-216ENST00000617003 1561 ntBASIC18.05■□□□□ 0.48
CHD9Q3L8U1 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CHD9Q3L8U1 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC18.05■□□□□ 0.48
CHD9Q3L8U1 AL844908.2-201ENST00000609461 460 ntBASIC18.05■□□□□ 0.48
CHD9Q3L8U1 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC18.05■□□□□ 0.48
CHD9Q3L8U1 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CHD9Q3L8U1 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHD9Q3L8U1 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.04■□□□□ 0.48
CHD9Q3L8U1 WIZP1-201ENST00000531444 2299 ntBASIC18.04■□□□□ 0.48
CHD9Q3L8U1 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC18.04■□□□□ 0.48
CHD9Q3L8U1 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC18.04■□□□□ 0.48
CHD9Q3L8U1 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CHD9Q3L8U1 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CHD9Q3L8U1 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.04■□□□□ 0.48
CHD9Q3L8U1 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHD9Q3L8U1 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CHD9Q3L8U1 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC18.04■□□□□ 0.48
CHD9Q3L8U1 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHD9Q3L8U1 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
CHD9Q3L8U1 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC18.04■□□□□ 0.48
CHD9Q3L8U1 DFFBP1-201ENST00000433250 979 ntBASIC18.04■□□□□ 0.48
CHD9Q3L8U1 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHD9Q3L8U1 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHD9Q3L8U1 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC18.04■□□□□ 0.48
CHD9Q3L8U1 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHD9Q3L8U1 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC18.04■□□□□ 0.48
CHD9Q3L8U1 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHD9Q3L8U1 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHD9Q3L8U1 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CHD9Q3L8U1 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CHD9Q3L8U1 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
CHD9Q3L8U1 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHD9Q3L8U1 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHD9Q3L8U1 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC18.04■□□□□ 0.48
CHD9Q3L8U1 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
CHD9Q3L8U1 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC18.04■□□□□ 0.48
CHD9Q3L8U1 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC18.04■□□□□ 0.48
CHD9Q3L8U1 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC18.04■□□□□ 0.48
CHD9Q3L8U1 STOM-203ENST00000538954 1257 ntTSL 5 BASIC18.04■□□□□ 0.48
CHD9Q3L8U1 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CHD9Q3L8U1 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHD9Q3L8U1 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
CHD9Q3L8U1 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC18.03■□□□□ 0.48
CHD9Q3L8U1 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
CHD9Q3L8U1 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
CHD9Q3L8U1 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC18.03■□□□□ 0.48
CHD9Q3L8U1 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHD9Q3L8U1 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHD9Q3L8U1 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHD9Q3L8U1 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHD9Q3L8U1 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC18.03■□□□□ 0.48
CHD9Q3L8U1 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHD9Q3L8U1 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC18.03■□□□□ 0.48
CHD9Q3L8U1 AL080243.2-201ENST00000418783 582 ntBASIC18.03■□□□□ 0.48
CHD9Q3L8U1 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC18.03■□□□□ 0.48
CHD9Q3L8U1 FUZ-207ENST00000526575 482 ntTSL 4 BASIC18.03■□□□□ 0.48
CHD9Q3L8U1 RAB43P1-201ENST00000561790 589 ntBASIC18.03■□□□□ 0.48
CHD9Q3L8U1 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC18.03■□□□□ 0.48
CHD9Q3L8U1 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CHD9Q3L8U1 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
CHD9Q3L8U1 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
CHD9Q3L8U1 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CHD9Q3L8U1 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC18.03■□□□□ 0.48
CHD9Q3L8U1 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHD9Q3L8U1 SLC25A6P5-201ENST00000435663 894 ntBASIC18.03■□□□□ 0.48
CHD9Q3L8U1 HLA-V-204ENST00000476601 1289 ntBASIC18.03■□□□□ 0.48
CHD9Q3L8U1 IGHV3-62-201ENST00000520057 340 ntBASIC18.03■□□□□ 0.48
CHD9Q3L8U1 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC18.03■□□□□ 0.48
CHD9Q3L8U1 BANF1P1-201ENST00000553684 263 ntBASIC18.03■□□□□ 0.48
CHD9Q3L8U1 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC18.03■□□□□ 0.48
CHD9Q3L8U1 MIR6787-201ENST00000616675 61 ntBASIC18.03■□□□□ 0.48
CHD9Q3L8U1 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
CHD9Q3L8U1 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC18.03■□□□□ 0.48
CHD9Q3L8U1 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CHD9Q3L8U1 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHD9Q3L8U1 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC18.03■□□□□ 0.48
CHD9Q3L8U1 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHD9Q3L8U1 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC18.03■□□□□ 0.48
CHD9Q3L8U1 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC18.03■□□□□ 0.48
CHD9Q3L8U1 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC18.03■□□□□ 0.48
CHD9Q3L8U1 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CHD9Q3L8U1 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC18.02■□□□□ 0.48
CHD9Q3L8U1 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CHD9Q3L8U1 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CHD9Q3L8U1 STK4-201ENST00000372801 2038 ntTSL 2 BASIC18.02■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms