Protein–RNA interactions for Protein: P53675

CLTCL1, Clathrin heavy chain 2, humanhuman

Predictions only

Length 1,640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1P53675 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
CLTCL1P53675 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
CLTCL1P53675 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
CLTCL1P53675 FOXO1B-201ENST00000504678 1527 ntBASIC24.42■■□□□ 1.5
CLTCL1P53675 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CLTCL1P53675 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC24.42■■□□□ 1.5
CLTCL1P53675 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CLTCL1P53675 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC24.42■■□□□ 1.5
CLTCL1P53675 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CLTCL1P53675 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC24.42■■□□□ 1.5
CLTCL1P53675 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC24.42■■□□□ 1.5
CLTCL1P53675 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CLTCL1P53675 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC24.42■■□□□ 1.5
CLTCL1P53675 PMS2P4-201ENST00000412466 1052 ntBASIC24.42■■□□□ 1.5
CLTCL1P53675 AC092474.2-201ENST00000424288 719 ntBASIC24.42■■□□□ 1.5
CLTCL1P53675 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC24.42■■□□□ 1.5
CLTCL1P53675 UGT1A2P-201ENST00000454886 866 ntBASIC24.42■■□□□ 1.5
CLTCL1P53675 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC24.42■■□□□ 1.5
CLTCL1P53675 CFL1-212ENST00000531413 636 ntTSL 3 BASIC24.42■■□□□ 1.5
CLTCL1P53675 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC24.42■■□□□ 1.5
CLTCL1P53675 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC24.42■■□□□ 1.5
CLTCL1P53675 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC24.42■■□□□ 1.5
CLTCL1P53675 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CLTCL1P53675 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
CLTCL1P53675 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
CLTCL1P53675 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC24.41■■□□□ 1.5
CLTCL1P53675 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC24.41■■□□□ 1.5
CLTCL1P53675 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC24.41■■□□□ 1.5
CLTCL1P53675 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC24.41■■□□□ 1.5
CLTCL1P53675 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
CLTCL1P53675 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC24.41■■□□□ 1.5
CLTCL1P53675 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
CLTCL1P53675 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
CLTCL1P53675 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
CLTCL1P53675 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
CLTCL1P53675 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC24.41■■□□□ 1.5
CLTCL1P53675 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC24.41■■□□□ 1.5
CLTCL1P53675 HNRNPFP1-201ENST00000391730 1133 ntBASIC24.41■■□□□ 1.5
CLTCL1P53675 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC24.41■■□□□ 1.5
CLTCL1P53675 PPP6R2P1-201ENST00000450880 1275 ntBASIC24.41■■□□□ 1.5
CLTCL1P53675 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC24.41■■□□□ 1.5
CLTCL1P53675 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC24.41■■□□□ 1.5
CLTCL1P53675 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC24.41■■□□□ 1.5
CLTCL1P53675 FOS-208ENST00000555686 1496 ntTSL 2 BASIC24.41■■□□□ 1.5
CLTCL1P53675 AC087641.1-201ENST00000557561 1021 ntBASIC24.41■■□□□ 1.5
CLTCL1P53675 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC24.41■■□□□ 1.5
CLTCL1P53675 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
CLTCL1P53675 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC24.41■■□□□ 1.5
CLTCL1P53675 MIR6080-201ENST00000617359 66 ntBASIC24.41■■□□□ 1.5
CLTCL1P53675 AC131009.4-201ENST00000624048 1740 ntBASIC24.41■■□□□ 1.5
CLTCL1P53675 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC24.41■■□□□ 1.5
CLTCL1P53675 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC24.41■■□□□ 1.5
CLTCL1P53675 AL390961.4-201ENST00000623958 2535 ntBASIC24.41■■□□□ 1.5
CLTCL1P53675 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
CLTCL1P53675 GNE-204ENST00000539208 2190 ntTSL 2 BASIC24.4■■□□□ 1.5
CLTCL1P53675 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC24.4■■□□□ 1.5
CLTCL1P53675 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC24.4■■□□□ 1.5
CLTCL1P53675 AC008677.1-201ENST00000519230 1561 ntBASIC24.4■■□□□ 1.5
CLTCL1P53675 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
CLTCL1P53675 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC24.4■■□□□ 1.5
CLTCL1P53675 TREML5P-201ENST00000421694 576 ntBASIC24.4■■□□□ 1.5
CLTCL1P53675 AC092580.3-201ENST00000430932 139 ntBASIC24.4■■□□□ 1.5
CLTCL1P53675 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC24.4■■□□□ 1.5
CLTCL1P53675 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC24.4■■□□□ 1.5
CLTCL1P53675 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
CLTCL1P53675 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
CLTCL1P53675 LINC00896-202ENST00000609602 2128 ntBASIC24.4■■□□□ 1.5
CLTCL1P53675 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC24.4■■□□□ 1.5
CLTCL1P53675 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC24.4■■□□□ 1.5
CLTCL1P53675 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC24.4■■□□□ 1.5
CLTCL1P53675 STX3-203ENST00000529177 1571 ntTSL 2 BASIC24.4■■□□□ 1.5
CLTCL1P53675 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC24.4■■□□□ 1.5
CLTCL1P53675 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC24.39■■□□□ 1.5
CLTCL1P53675 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC24.39■■□□□ 1.5
CLTCL1P53675 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
CLTCL1P53675 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC24.39■■□□□ 1.5
CLTCL1P53675 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC24.39■■□□□ 1.5
CLTCL1P53675 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
CLTCL1P53675 BAD-202ENST00000394531 631 ntTSL 3 BASIC24.39■■□□□ 1.5
CLTCL1P53675 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
CLTCL1P53675 CENPM-205ENST00000404067 905 ntTSL 3 BASIC24.39■■□□□ 1.5
CLTCL1P53675 COX20P2-201ENST00000452636 358 ntBASIC24.39■■□□□ 1.5
CLTCL1P53675 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC24.39■■□□□ 1.5
CLTCL1P53675 BAD-207ENST00000544785 525 ntTSL 3 BASIC24.39■■□□□ 1.5
CLTCL1P53675 AC140878.1-201ENST00000565277 250 ntBASIC24.39■■□□□ 1.5
CLTCL1P53675 HFE2-206ENST00000634927 506 ntTSL 4 BASIC24.39■■□□□ 1.5
CLTCL1P53675 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
CLTCL1P53675 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC24.39■■□□□ 1.49
CLTCL1P53675 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC24.39■■□□□ 1.49
CLTCL1P53675 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
CLTCL1P53675 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC24.39■■□□□ 1.49
CLTCL1P53675 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC24.39■■□□□ 1.49
CLTCL1P53675 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
CLTCL1P53675 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC24.39■■□□□ 1.49
CLTCL1P53675 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.49
CLTCL1P53675 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
CLTCL1P53675 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC24.39■■□□□ 1.49
CLTCL1P53675 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC24.39■■□□□ 1.49
CLTCL1P53675 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
CLTCL1P53675 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC24.39■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms