Protein–RNA interactions for Protein: P46736

BRCC3, Lys-63-specific deubiquitinase BRCC36, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCC3P46736 CFL1-202ENST00000524553 860 ntTSL 2 BASIC18.31■□□□□ 0.52
BRCC3P46736 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
BRCC3P46736 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
BRCC3P46736 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
BRCC3P46736 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC18.31■□□□□ 0.52
BRCC3P46736 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
BRCC3P46736 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
BRCC3P46736 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
BRCC3P46736 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
BRCC3P46736 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
BRCC3P46736 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
BRCC3P46736 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
BRCC3P46736 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC18.3■□□□□ 0.52
BRCC3P46736 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
BRCC3P46736 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
BRCC3P46736 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC18.3■□□□□ 0.52
BRCC3P46736 URGCP-206ENST00000446958 365 ntTSL 2 BASIC18.3■□□□□ 0.52
BRCC3P46736 AL513480.1-201ENST00000451731 511 ntBASIC18.3■□□□□ 0.52
BRCC3P46736 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC18.3■□□□□ 0.52
BRCC3P46736 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
BRCC3P46736 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC18.3■□□□□ 0.52
BRCC3P46736 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC18.3■□□□□ 0.52
BRCC3P46736 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
BRCC3P46736 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC18.3■□□□□ 0.52
BRCC3P46736 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
BRCC3P46736 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
BRCC3P46736 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
BRCC3P46736 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
BRCC3P46736 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
BRCC3P46736 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC18.29■□□□□ 0.52
BRCC3P46736 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
BRCC3P46736 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
BRCC3P46736 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
BRCC3P46736 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
BRCC3P46736 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC18.29■□□□□ 0.52
BRCC3P46736 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
BRCC3P46736 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
BRCC3P46736 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
BRCC3P46736 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
BRCC3P46736 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
BRCC3P46736 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC18.29■□□□□ 0.52
BRCC3P46736 FAM58CP-201ENST00000435741 640 ntBASIC18.29■□□□□ 0.52
BRCC3P46736 AP006288.1-201ENST00000446065 395 ntBASIC18.29■□□□□ 0.52
BRCC3P46736 CEND1P1-201ENST00000451006 455 ntBASIC18.29■□□□□ 0.52
BRCC3P46736 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
BRCC3P46736 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC18.29■□□□□ 0.52
BRCC3P46736 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
BRCC3P46736 AL031432.2-201ENST00000566714 459 ntBASIC18.29■□□□□ 0.52
BRCC3P46736 AL928711.1-201ENST00000570165 459 ntBASIC18.29■□□□□ 0.52
BRCC3P46736 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC18.29■□□□□ 0.52
BRCC3P46736 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC18.29■□□□□ 0.52
BRCC3P46736 AC079781.4-201ENST00000641908 219 ntBASIC18.29■□□□□ 0.52
BRCC3P46736 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
BRCC3P46736 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
BRCC3P46736 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
BRCC3P46736 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC18.29■□□□□ 0.52
BRCC3P46736 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
BRCC3P46736 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.29■□□□□ 0.52
BRCC3P46736 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
BRCC3P46736 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC18.28■□□□□ 0.52
BRCC3P46736 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
BRCC3P46736 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
BRCC3P46736 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
BRCC3P46736 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.28■□□□□ 0.52
BRCC3P46736 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
BRCC3P46736 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
BRCC3P46736 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
BRCC3P46736 AC092919.2-201ENST00000623631 1645 ntBASIC18.28■□□□□ 0.52
BRCC3P46736 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
BRCC3P46736 ELL2P1-201ENST00000413990 1906 ntBASIC18.28■□□□□ 0.52
BRCC3P46736 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
BRCC3P46736 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
BRCC3P46736 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
BRCC3P46736 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC18.28■□□□□ 0.52
BRCC3P46736 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
BRCC3P46736 MKNK2P1-201ENST00000437526 628 ntBASIC18.28■□□□□ 0.52
BRCC3P46736 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC18.28■□□□□ 0.52
BRCC3P46736 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC18.28■□□□□ 0.52
BRCC3P46736 AC107918.2-201ENST00000530817 355 ntBASIC18.28■□□□□ 0.52
BRCC3P46736 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC18.28■□□□□ 0.52
BRCC3P46736 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC18.28■□□□□ 0.52
BRCC3P46736 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
BRCC3P46736 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC18.28■□□□□ 0.52
BRCC3P46736 AL133373.2-201ENST00000623187 2828 ntBASIC18.28■□□□□ 0.52
BRCC3P46736 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC18.28■□□□□ 0.52
BRCC3P46736 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
BRCC3P46736 AC067852.2-201ENST00000590513 2313 ntBASIC18.28■□□□□ 0.52
BRCC3P46736 TPR-209ENST00000613151 2478 ntTSL 5 BASIC18.28■□□□□ 0.52
BRCC3P46736 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
BRCC3P46736 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.28■□□□□ 0.52
BRCC3P46736 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC18.28■□□□□ 0.52
BRCC3P46736 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC18.27■□□□□ 0.52
BRCC3P46736 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
BRCC3P46736 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
BRCC3P46736 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
BRCC3P46736 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
BRCC3P46736 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
BRCC3P46736 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
BRCC3P46736 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
BRCC3P46736 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms