Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 RNF126P1-202ENST00000569893 925 ntBASIC17.5■□□□□ 0.39
RPA3P35244 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC17.5■□□□□ 0.39
RPA3P35244 AC011498.5-201ENST00000592027 486 ntBASIC17.5■□□□□ 0.39
RPA3P35244 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
RPA3P35244 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RPA3P35244 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RPA3P35244 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
RPA3P35244 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17.5■□□□□ 0.39
RPA3P35244 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RPA3P35244 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC17.5■□□□□ 0.39
RPA3P35244 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RPA3P35244 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
RPA3P35244 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC17.5■□□□□ 0.39
RPA3P35244 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
RPA3P35244 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
RPA3P35244 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC17.49■□□□□ 0.39
RPA3P35244 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RPA3P35244 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC17.49■□□□□ 0.39
RPA3P35244 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RPA3P35244 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RPA3P35244 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC17.49■□□□□ 0.39
RPA3P35244 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
RPA3P35244 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RPA3P35244 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RPA3P35244 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RPA3P35244 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RPA3P35244 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RPA3P35244 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC17.49■□□□□ 0.39
RPA3P35244 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
RPA3P35244 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RPA3P35244 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
RPA3P35244 FXN-203ENST00000396366 922 ntTSL 2 BASIC17.49■□□□□ 0.39
RPA3P35244 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
RPA3P35244 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RPA3P35244 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RPA3P35244 TPM1-226ENST00000560959 925 ntTSL 2 BASIC17.49■□□□□ 0.39
RPA3P35244 AL390719.2-201ENST00000606993 987 ntBASIC17.49■□□□□ 0.39
RPA3P35244 AL139327.4-201ENST00000612362 153 ntBASIC17.49■□□□□ 0.39
RPA3P35244 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.49■□□□□ 0.39
RPA3P35244 PCDHA1-201ENST00000378133 2726 ntBASIC17.49■□□□□ 0.39
RPA3P35244 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RPA3P35244 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
RPA3P35244 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
RPA3P35244 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
RPA3P35244 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RPA3P35244 IER3-202ENST00000376377 1350 ntBASIC17.49■□□□□ 0.39
RPA3P35244 AL353692.3-201ENST00000407031 1396 ntBASIC17.49■□□□□ 0.39
RPA3P35244 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
RPA3P35244 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
RPA3P35244 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RPA3P35244 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
RPA3P35244 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RPA3P35244 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC17.49■□□□□ 0.39
RPA3P35244 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.49■□□□□ 0.39
RPA3P35244 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RPA3P35244 FUK-207ENST00000571514 3054 ntTSL 2 BASIC17.49■□□□□ 0.39
RPA3P35244 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17.48■□□□□ 0.39
RPA3P35244 UBC-206ENST00000538617 1303 ntTSL 5 BASIC17.48■□□□□ 0.39
RPA3P35244 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RPA3P35244 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RPA3P35244 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RPA3P35244 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RPA3P35244 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC17.48■□□□□ 0.39
RPA3P35244 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RPA3P35244 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC17.48■□□□□ 0.39
RPA3P35244 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC17.48■□□□□ 0.39
RPA3P35244 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RPA3P35244 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RPA3P35244 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RPA3P35244 DDT-203ENST00000403754 569 ntTSL 3 BASIC17.48■□□□□ 0.39
RPA3P35244 TSPY12P-201ENST00000421279 868 ntBASIC17.48■□□□□ 0.39
RPA3P35244 TSPY22P-201ENST00000427496 604 ntBASIC17.48■□□□□ 0.39
RPA3P35244 DDT-206ENST00000430101 573 ntTSL 2 BASIC17.48■□□□□ 0.39
RPA3P35244 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC17.48■□□□□ 0.39
RPA3P35244 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
RPA3P35244 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC17.48■□□□□ 0.39
RPA3P35244 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RPA3P35244 PTK2-216ENST00000519881 863 ntTSL 3 BASIC17.48■□□□□ 0.39
RPA3P35244 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC17.48■□□□□ 0.39
RPA3P35244 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC17.48■□□□□ 0.39
RPA3P35244 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
RPA3P35244 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC17.48■□□□□ 0.39
RPA3P35244 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RPA3P35244 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RPA3P35244 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RPA3P35244 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
RPA3P35244 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC17.48■□□□□ 0.39
RPA3P35244 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RPA3P35244 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RPA3P35244 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RPA3P35244 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
RPA3P35244 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
RPA3P35244 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC17.48■□□□□ 0.39
RPA3P35244 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RPA3P35244 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
RPA3P35244 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC17.48■□□□□ 0.39
RPA3P35244 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC17.48■□□□□ 0.39
RPA3P35244 AC006449.5-201ENST00000610658 2098 ntBASIC17.48■□□□□ 0.39
RPA3P35244 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
RPA3P35244 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms