Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL6A2P12110 AL135999.2-201ENST00000622438 1686 ntBASIC17.1■□□□□ 0.33
COL6A2P12110 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
COL6A2P12110 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC17.1■□□□□ 0.33
COL6A2P12110 AC078925.2-201ENST00000624013 1973 ntBASIC17.09■□□□□ 0.33
COL6A2P12110 AC092068.3-201ENST00000587894 2016 ntBASIC17.09■□□□□ 0.33
COL6A2P12110 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A2P12110 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A2P12110 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
COL6A2P12110 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A2P12110 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A2P12110 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A2P12110 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A2P12110 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A2P12110 AC003669.1-201ENST00000334569 611 ntBASIC17.09■□□□□ 0.33
COL6A2P12110 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC17.09■□□□□ 0.33
COL6A2P12110 KRT8P26-201ENST00000534154 1276 ntBASIC17.09■□□□□ 0.33
COL6A2P12110 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC17.09■□□□□ 0.33
COL6A2P12110 LINC01023-201ENST00000606054 436 ntBASIC17.09■□□□□ 0.33
COL6A2P12110 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A2P12110 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
COL6A2P12110 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A2P12110 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A2P12110 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A2P12110 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
COL6A2P12110 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A2P12110 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC17.09■□□□□ 0.33
COL6A2P12110 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC17.09■□□□□ 0.33
COL6A2P12110 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC17.09■□□□□ 0.33
COL6A2P12110 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A2P12110 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A2P12110 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
COL6A2P12110 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC17.09■□□□□ 0.33
COL6A2P12110 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A2P12110 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A2P12110 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A2P12110 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A2P12110 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL6A2P12110 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
COL6A2P12110 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
COL6A2P12110 PCDHB19P-201ENST00000570871 2371 ntBASIC17.08■□□□□ 0.33
COL6A2P12110 AL603756.1-201ENST00000606511 2163 ntBASIC17.08■□□□□ 0.33
COL6A2P12110 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
COL6A2P12110 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL6A2P12110 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC17.08■□□□□ 0.33
COL6A2P12110 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL6A2P12110 GPR89P-201ENST00000407924 1495 ntBASIC17.08■□□□□ 0.32
COL6A2P12110 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL6A2P12110 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
COL6A2P12110 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC17.08■□□□□ 0.32
COL6A2P12110 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL6A2P12110 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL6A2P12110 CTNS-203ENST00000399306 803 ntTSL 3 BASIC17.08■□□□□ 0.32
COL6A2P12110 AC211429.1-201ENST00000415277 523 ntBASIC17.08■□□□□ 0.32
COL6A2P12110 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC17.08■□□□□ 0.32
COL6A2P12110 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC17.08■□□□□ 0.32
COL6A2P12110 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC17.08■□□□□ 0.32
COL6A2P12110 AL136038.3-201ENST00000561909 1096 ntBASIC17.08■□□□□ 0.32
COL6A2P12110 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
COL6A2P12110 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
COL6A2P12110 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC17.08■□□□□ 0.32
COL6A2P12110 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL6A2P12110 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL6A2P12110 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC17.08■□□□□ 0.32
COL6A2P12110 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC17.08■□□□□ 0.32
COL6A2P12110 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC17.08■□□□□ 0.32
COL6A2P12110 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL6A2P12110 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL6A2P12110 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL6A2P12110 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL6A2P12110 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC17.08■□□□□ 0.32
COL6A2P12110 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL6A2P12110 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL6A2P12110 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL6A2P12110 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
COL6A2P12110 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC17.07■□□□□ 0.32
COL6A2P12110 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL6A2P12110 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
COL6A2P12110 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL6A2P12110 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.07■□□□□ 0.32
COL6A2P12110 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL6A2P12110 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL6A2P12110 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL6A2P12110 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL6A2P12110 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
COL6A2P12110 CCS-201ENST00000310190 942 ntTSL 5 BASIC17.07■□□□□ 0.32
COL6A2P12110 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL6A2P12110 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL6A2P12110 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC17.07■□□□□ 0.32
COL6A2P12110 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL6A2P12110 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC17.07■□□□□ 0.32
COL6A2P12110 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC17.07■□□□□ 0.32
COL6A2P12110 PPOX-219ENST00000544598 813 ntTSL 2 BASIC17.07■□□□□ 0.32
COL6A2P12110 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC17.07■□□□□ 0.32
COL6A2P12110 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC17.07■□□□□ 0.32
COL6A2P12110 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL6A2P12110 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC17.07■□□□□ 0.32
COL6A2P12110 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL6A2P12110 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL6A2P12110 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms