Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
HLA-DOAP06340 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HLA-DOAP06340 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
HLA-DOAP06340 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC20.28■□□□□ 0.84
HLA-DOAP06340 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
HLA-DOAP06340 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HLA-DOAP06340 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HLA-DOAP06340 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HLA-DOAP06340 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
HLA-DOAP06340 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HLA-DOAP06340 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HLA-DOAP06340 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC20.28■□□□□ 0.84
HLA-DOAP06340 CCND1-203ENST00000536559 553 ntTSL 3 BASIC20.28■□□□□ 0.84
HLA-DOAP06340 AL031432.2-201ENST00000566714 459 ntBASIC20.28■□□□□ 0.84
HLA-DOAP06340 AL928711.1-201ENST00000570165 459 ntBASIC20.28■□□□□ 0.84
HLA-DOAP06340 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HLA-DOAP06340 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HLA-DOAP06340 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HLA-DOAP06340 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HLA-DOAP06340 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
HLA-DOAP06340 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HLA-DOAP06340 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HLA-DOAP06340 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
HLA-DOAP06340 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
HLA-DOAP06340 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HLA-DOAP06340 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
HLA-DOAP06340 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HLA-DOAP06340 HNRNPRP1-201ENST00000453465 1695 ntBASIC20.27■□□□□ 0.84
HLA-DOAP06340 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HLA-DOAP06340 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HLA-DOAP06340 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
HLA-DOAP06340 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
HLA-DOAP06340 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HLA-DOAP06340 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HLA-DOAP06340 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
HLA-DOAP06340 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HLA-DOAP06340 DDT-204ENST00000404092 805 ntTSL 3 BASIC20.27■□□□□ 0.84
HLA-DOAP06340 CNN2P11-201ENST00000429351 262 ntBASIC20.27■□□□□ 0.84
HLA-DOAP06340 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
HLA-DOAP06340 PUS1-205ENST00000535067 838 ntTSL 3 BASIC20.27■□□□□ 0.84
HLA-DOAP06340 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
HLA-DOAP06340 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
HLA-DOAP06340 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC20.27■□□□□ 0.84
HLA-DOAP06340 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
HLA-DOAP06340 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC20.27■□□□□ 0.84
HLA-DOAP06340 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC20.27■□□□□ 0.84
HLA-DOAP06340 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
HLA-DOAP06340 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
HLA-DOAP06340 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
HLA-DOAP06340 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
HLA-DOAP06340 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HLA-DOAP06340 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HLA-DOAP06340 AC008764.6-201ENST00000595909 2069 ntBASIC20.26■□□□□ 0.83
HLA-DOAP06340 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HLA-DOAP06340 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HLA-DOAP06340 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HLA-DOAP06340 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
HLA-DOAP06340 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
HLA-DOAP06340 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HLA-DOAP06340 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
HLA-DOAP06340 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
HLA-DOAP06340 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC20.26■□□□□ 0.83
HLA-DOAP06340 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC20.26■□□□□ 0.83
HLA-DOAP06340 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC20.26■□□□□ 0.83
HLA-DOAP06340 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC20.26■□□□□ 0.83
HLA-DOAP06340 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC20.26■□□□□ 0.83
HLA-DOAP06340 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC20.26■□□□□ 0.83
HLA-DOAP06340 CITED2-204ENST00000618718 901 ntTSL 2 BASIC20.26■□□□□ 0.83
HLA-DOAP06340 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HLA-DOAP06340 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HLA-DOAP06340 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HLA-DOAP06340 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
HLA-DOAP06340 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
HLA-DOAP06340 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC20.26■□□□□ 0.83
HLA-DOAP06340 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HLA-DOAP06340 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
HLA-DOAP06340 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC20.26■□□□□ 0.83
HLA-DOAP06340 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HLA-DOAP06340 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HLA-DOAP06340 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HLA-DOAP06340 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
HLA-DOAP06340 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC20.25■□□□□ 0.83
HLA-DOAP06340 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HLA-DOAP06340 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HLA-DOAP06340 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HLA-DOAP06340 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
HLA-DOAP06340 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HLA-DOAP06340 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HLA-DOAP06340 LBH-203ENST00000404397 543 ntTSL 4 BASIC20.25■□□□□ 0.83
HLA-DOAP06340 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
HLA-DOAP06340 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC20.25■□□□□ 0.83
HLA-DOAP06340 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC20.25■□□□□ 0.83
HLA-DOAP06340 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC20.25■□□□□ 0.83
HLA-DOAP06340 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
HLA-DOAP06340 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
HLA-DOAP06340 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC20.25■□□□□ 0.83
HLA-DOAP06340 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HLA-DOAP06340 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HLA-DOAP06340 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC20.25■□□□□ 0.83
HLA-DOAP06340 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms