Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
SIX3O95343 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
SIX3O95343 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SIX3O95343 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SIX3O95343 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
SIX3O95343 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SIX3O95343 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC16.9■□□□□ 0.3
SIX3O95343 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC16.9■□□□□ 0.3
SIX3O95343 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC16.9■□□□□ 0.3
SIX3O95343 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SIX3O95343 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SIX3O95343 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SIX3O95343 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC16.9■□□□□ 0.3
SIX3O95343 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SIX3O95343 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SIX3O95343 PCED1CP-201ENST00000419887 785 ntBASIC16.9■□□□□ 0.3
SIX3O95343 ISCU-203ENST00000431221 799 ntTSL 2 BASIC16.9■□□□□ 0.3
SIX3O95343 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
SIX3O95343 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC16.9■□□□□ 0.3
SIX3O95343 STK19B-204ENST00000512515 211 ntBASIC16.9■□□□□ 0.3
SIX3O95343 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC16.9■□□□□ 0.3
SIX3O95343 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SIX3O95343 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SIX3O95343 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC16.9■□□□□ 0.3
SIX3O95343 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC16.9■□□□□ 0.3
SIX3O95343 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SIX3O95343 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC16.9■□□□□ 0.3
SIX3O95343 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC16.9■□□□□ 0.3
SIX3O95343 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
SIX3O95343 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
SIX3O95343 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
SIX3O95343 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SIX3O95343 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC16.89■□□□□ 0.3
SIX3O95343 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
SIX3O95343 EGFEM1P-202ENST00000431685 1563 ntBASIC16.89■□□□□ 0.3
SIX3O95343 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC16.89■□□□□ 0.29
SIX3O95343 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
SIX3O95343 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SIX3O95343 AC092171.3-201ENST00000610122 2651 ntBASIC16.89■□□□□ 0.29
SIX3O95343 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SIX3O95343 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SIX3O95343 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SIX3O95343 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
SIX3O95343 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SIX3O95343 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SIX3O95343 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SIX3O95343 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SIX3O95343 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
SIX3O95343 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SIX3O95343 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
SIX3O95343 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC16.89■□□□□ 0.29
SIX3O95343 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC16.89■□□□□ 0.29
SIX3O95343 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC16.89■□□□□ 0.29
SIX3O95343 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SIX3O95343 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC16.89■□□□□ 0.29
SIX3O95343 TPSP2-201ENST00000561760 610 ntBASIC16.89■□□□□ 0.29
SIX3O95343 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC16.89■□□□□ 0.29
SIX3O95343 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC16.89■□□□□ 0.29
SIX3O95343 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16.89■□□□□ 0.29
SIX3O95343 AD001527.2-201ENST00000622994 785 ntBASIC16.89■□□□□ 0.29
SIX3O95343 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SIX3O95343 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SIX3O95343 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC16.89■□□□□ 0.29
SIX3O95343 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.89■□□□□ 0.29
SIX3O95343 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
SIX3O95343 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SIX3O95343 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SIX3O95343 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC16.88■□□□□ 0.29
SIX3O95343 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SIX3O95343 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SIX3O95343 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SIX3O95343 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.88■□□□□ 0.29
SIX3O95343 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SIX3O95343 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SIX3O95343 AC078925.2-201ENST00000624013 1973 ntBASIC16.88■□□□□ 0.29
SIX3O95343 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC16.88■□□□□ 0.29
SIX3O95343 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC16.88■□□□□ 0.29
SIX3O95343 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.88■□□□□ 0.29
SIX3O95343 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
SIX3O95343 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SIX3O95343 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SIX3O95343 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
SIX3O95343 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
SIX3O95343 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SIX3O95343 NKTR-203ENST00000442970 646 ntTSL 2 BASIC16.88■□□□□ 0.29
SIX3O95343 DANCR-204ENST00000444958 709 ntTSL 3 BASIC16.88■□□□□ 0.29
SIX3O95343 TOB2P1-201ENST00000469761 992 ntBASIC16.88■□□□□ 0.29
SIX3O95343 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC16.88■□□□□ 0.29
SIX3O95343 AC087388.1-201ENST00000571370 1112 ntBASIC16.88■□□□□ 0.29
SIX3O95343 AP002414.4-201ENST00000589764 1148 ntBASIC16.88■□□□□ 0.29
SIX3O95343 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC16.88■□□□□ 0.29
SIX3O95343 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SIX3O95343 STX3-203ENST00000529177 1571 ntTSL 2 BASIC16.88■□□□□ 0.29
SIX3O95343 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.88■□□□□ 0.29
SIX3O95343 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.88■□□□□ 0.29
SIX3O95343 PCDHB19P-201ENST00000570871 2371 ntBASIC16.88■□□□□ 0.29
SIX3O95343 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SIX3O95343 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
SIX3O95343 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SIX3O95343 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms