Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SSX2IPQ9Y2D8 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SSX2IPQ9Y2D8 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
SSX2IPQ9Y2D8 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SSX2IPQ9Y2D8 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SSX2IPQ9Y2D8 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SSX2IPQ9Y2D8 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SSX2IPQ9Y2D8 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC18.6■□□□□ 0.57
SSX2IPQ9Y2D8 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC18.6■□□□□ 0.57
SSX2IPQ9Y2D8 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SSX2IPQ9Y2D8 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
SSX2IPQ9Y2D8 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC18.6■□□□□ 0.57
SSX2IPQ9Y2D8 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SSX2IPQ9Y2D8 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SSX2IPQ9Y2D8 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SSX2IPQ9Y2D8 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
SSX2IPQ9Y2D8 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC18.6■□□□□ 0.57
SSX2IPQ9Y2D8 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
SSX2IPQ9Y2D8 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SSX2IPQ9Y2D8 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC18.6■□□□□ 0.57
SSX2IPQ9Y2D8 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
SSX2IPQ9Y2D8 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SSX2IPQ9Y2D8 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC18.6■□□□□ 0.57
SSX2IPQ9Y2D8 AP006288.1-201ENST00000446065 395 ntBASIC18.6■□□□□ 0.57
SSX2IPQ9Y2D8 AC002558.1-201ENST00000488906 803 ntBASIC18.6■□□□□ 0.57
SSX2IPQ9Y2D8 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SSX2IPQ9Y2D8 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC18.6■□□□□ 0.57
SSX2IPQ9Y2D8 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
SSX2IPQ9Y2D8 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SSX2IPQ9Y2D8 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
SSX2IPQ9Y2D8 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SSX2IPQ9Y2D8 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SSX2IPQ9Y2D8 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
SSX2IPQ9Y2D8 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SSX2IPQ9Y2D8 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SSX2IPQ9Y2D8 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SSX2IPQ9Y2D8 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SSX2IPQ9Y2D8 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC18.6■□□□□ 0.57
SSX2IPQ9Y2D8 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
SSX2IPQ9Y2D8 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SSX2IPQ9Y2D8 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
SSX2IPQ9Y2D8 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
SSX2IPQ9Y2D8 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC18.59■□□□□ 0.57
SSX2IPQ9Y2D8 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SSX2IPQ9Y2D8 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SSX2IPQ9Y2D8 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC18.59■□□□□ 0.57
SSX2IPQ9Y2D8 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC18.59■□□□□ 0.57
SSX2IPQ9Y2D8 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SSX2IPQ9Y2D8 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SSX2IPQ9Y2D8 AC093677.2-201ENST00000600169 1863 ntBASIC18.59■□□□□ 0.57
SSX2IPQ9Y2D8 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SSX2IPQ9Y2D8 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SSX2IPQ9Y2D8 MRPL20P1-201ENST00000400819 433 ntBASIC18.59■□□□□ 0.57
SSX2IPQ9Y2D8 HCG4B-203ENST00000450128 991 ntBASIC18.59■□□□□ 0.57
SSX2IPQ9Y2D8 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC18.59■□□□□ 0.57
SSX2IPQ9Y2D8 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SSX2IPQ9Y2D8 AC010654.1-201ENST00000615722 808 ntBASIC18.59■□□□□ 0.57
SSX2IPQ9Y2D8 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC18.59■□□□□ 0.57
SSX2IPQ9Y2D8 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SSX2IPQ9Y2D8 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC18.59■□□□□ 0.57
SSX2IPQ9Y2D8 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SSX2IPQ9Y2D8 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
SSX2IPQ9Y2D8 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SSX2IPQ9Y2D8 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SSX2IPQ9Y2D8 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SSX2IPQ9Y2D8 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SSX2IPQ9Y2D8 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.59■□□□□ 0.57
SSX2IPQ9Y2D8 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SSX2IPQ9Y2D8 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SSX2IPQ9Y2D8 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
SSX2IPQ9Y2D8 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SSX2IPQ9Y2D8 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
SSX2IPQ9Y2D8 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SSX2IPQ9Y2D8 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SSX2IPQ9Y2D8 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
SSX2IPQ9Y2D8 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SSX2IPQ9Y2D8 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
SSX2IPQ9Y2D8 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC18.58■□□□□ 0.57
SSX2IPQ9Y2D8 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC18.58■□□□□ 0.57
SSX2IPQ9Y2D8 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SSX2IPQ9Y2D8 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SSX2IPQ9Y2D8 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SSX2IPQ9Y2D8 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SSX2IPQ9Y2D8 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
SSX2IPQ9Y2D8 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SSX2IPQ9Y2D8 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC18.58■□□□□ 0.56
SSX2IPQ9Y2D8 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC18.58■□□□□ 0.56
SSX2IPQ9Y2D8 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC18.58■□□□□ 0.56
SSX2IPQ9Y2D8 DNAJB3-202ENST00000449667 1266 ntBASIC18.58■□□□□ 0.56
SSX2IPQ9Y2D8 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC18.58■□□□□ 0.56
SSX2IPQ9Y2D8 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC18.58■□□□□ 0.56
SSX2IPQ9Y2D8 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC18.58■□□□□ 0.56
SSX2IPQ9Y2D8 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC18.58■□□□□ 0.56
SSX2IPQ9Y2D8 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC18.58■□□□□ 0.56
SSX2IPQ9Y2D8 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC18.58■□□□□ 0.56
SSX2IPQ9Y2D8 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC18.58■□□□□ 0.56
SSX2IPQ9Y2D8 AC004790.2-201ENST00000623588 572 ntBASIC18.58■□□□□ 0.56
SSX2IPQ9Y2D8 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SSX2IPQ9Y2D8 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SSX2IPQ9Y2D8 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC18.58■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms