Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC20.41■□□□□ 0.86
NKX2-3Q8TAU0 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC20.41■□□□□ 0.86
NKX2-3Q8TAU0 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC20.41■□□□□ 0.86
NKX2-3Q8TAU0 AC009947.1-201ENST00000444350 727 ntBASIC20.41■□□□□ 0.86
NKX2-3Q8TAU0 COX20P2-201ENST00000452636 358 ntBASIC20.41■□□□□ 0.86
NKX2-3Q8TAU0 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC20.41■□□□□ 0.86
NKX2-3Q8TAU0 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC20.41■□□□□ 0.86
NKX2-3Q8TAU0 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
NKX2-3Q8TAU0 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
NKX2-3Q8TAU0 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC20.41■□□□□ 0.86
NKX2-3Q8TAU0 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC20.41■□□□□ 0.86
NKX2-3Q8TAU0 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
NKX2-3Q8TAU0 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
NKX2-3Q8TAU0 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC20.41■□□□□ 0.86
NKX2-3Q8TAU0 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
NKX2-3Q8TAU0 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC20.41■□□□□ 0.86
NKX2-3Q8TAU0 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
NKX2-3Q8TAU0 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
NKX2-3Q8TAU0 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
NKX2-3Q8TAU0 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
NKX2-3Q8TAU0 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC20.41■□□□□ 0.86
NKX2-3Q8TAU0 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
NKX2-3Q8TAU0 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
NKX2-3Q8TAU0 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
NKX2-3Q8TAU0 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC20.4■□□□□ 0.86
NKX2-3Q8TAU0 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NKX2-3Q8TAU0 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
NKX2-3Q8TAU0 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NKX2-3Q8TAU0 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
NKX2-3Q8TAU0 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC20.4■□□□□ 0.86
NKX2-3Q8TAU0 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NKX2-3Q8TAU0 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC20.4■□□□□ 0.86
NKX2-3Q8TAU0 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
NKX2-3Q8TAU0 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC20.4■□□□□ 0.86
NKX2-3Q8TAU0 AP002472.1-201ENST00000577490 586 ntBASIC20.4■□□□□ 0.86
NKX2-3Q8TAU0 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC20.4■□□□□ 0.86
NKX2-3Q8TAU0 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
NKX2-3Q8TAU0 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC20.4■□□□□ 0.86
NKX2-3Q8TAU0 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
NKX2-3Q8TAU0 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
NKX2-3Q8TAU0 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
NKX2-3Q8TAU0 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
NKX2-3Q8TAU0 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC20.39■□□□□ 0.86
NKX2-3Q8TAU0 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.86
NKX2-3Q8TAU0 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
NKX2-3Q8TAU0 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC20.39■□□□□ 0.86
NKX2-3Q8TAU0 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC20.39■□□□□ 0.86
NKX2-3Q8TAU0 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
NKX2-3Q8TAU0 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
NKX2-3Q8TAU0 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
NKX2-3Q8TAU0 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
NKX2-3Q8TAU0 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
NKX2-3Q8TAU0 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
NKX2-3Q8TAU0 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC20.39■□□□□ 0.85
NKX2-3Q8TAU0 LAGE3P1-201ENST00000425356 484 ntBASIC20.39■□□□□ 0.85
NKX2-3Q8TAU0 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
NKX2-3Q8TAU0 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC20.39■□□□□ 0.85
NKX2-3Q8TAU0 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC20.39■□□□□ 0.85
NKX2-3Q8TAU0 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
NKX2-3Q8TAU0 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC20.39■□□□□ 0.85
NKX2-3Q8TAU0 HLA-J-203ENST00000494367 1087 ntBASIC20.39■□□□□ 0.85
NKX2-3Q8TAU0 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC20.39■□□□□ 0.85
NKX2-3Q8TAU0 COX5A-206ENST00000568783 571 ntTSL 3 BASIC20.39■□□□□ 0.85
NKX2-3Q8TAU0 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC20.39■□□□□ 0.85
NKX2-3Q8TAU0 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC20.39■□□□□ 0.85
NKX2-3Q8TAU0 AL589182.2-201ENST00000619332 1049 ntBASIC20.39■□□□□ 0.85
NKX2-3Q8TAU0 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
NKX2-3Q8TAU0 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
NKX2-3Q8TAU0 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
NKX2-3Q8TAU0 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
NKX2-3Q8TAU0 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
NKX2-3Q8TAU0 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
NKX2-3Q8TAU0 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
NKX2-3Q8TAU0 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NKX2-3Q8TAU0 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC20.38■□□□□ 0.85
NKX2-3Q8TAU0 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
NKX2-3Q8TAU0 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
NKX2-3Q8TAU0 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
NKX2-3Q8TAU0 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NKX2-3Q8TAU0 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
NKX2-3Q8TAU0 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NKX2-3Q8TAU0 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NKX2-3Q8TAU0 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC20.38■□□□□ 0.85
NKX2-3Q8TAU0 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC20.38■□□□□ 0.85
NKX2-3Q8TAU0 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NKX2-3Q8TAU0 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
NKX2-3Q8TAU0 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NKX2-3Q8TAU0 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC20.38■□□□□ 0.85
NKX2-3Q8TAU0 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC20.38■□□□□ 0.85
NKX2-3Q8TAU0 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NKX2-3Q8TAU0 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
NKX2-3Q8TAU0 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC20.38■□□□□ 0.85
NKX2-3Q8TAU0 COX5A-202ENST00000562233 441 ntTSL 3 BASIC20.38■□□□□ 0.85
NKX2-3Q8TAU0 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC20.38■□□□□ 0.85
NKX2-3Q8TAU0 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC20.38■□□□□ 0.85
NKX2-3Q8TAU0 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC20.38■□□□□ 0.85
NKX2-3Q8TAU0 AC064836.3-201ENST00000607928 673 ntBASIC20.38■□□□□ 0.85
NKX2-3Q8TAU0 PGM5P2-202ENST00000637225 1043 ntBASIC20.38■□□□□ 0.85
NKX2-3Q8TAU0 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
NKX2-3Q8TAU0 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC20.38■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms