Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.76
SH3RF1Q7Z6J0 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SH3RF1Q7Z6J0 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SH3RF1Q7Z6J0 AC073621.1-201ENST00000392730 636 ntBASIC19.77■□□□□ 0.76
SH3RF1Q7Z6J0 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC19.77■□□□□ 0.76
SH3RF1Q7Z6J0 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC19.77■□□□□ 0.76
SH3RF1Q7Z6J0 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC19.77■□□□□ 0.76
SH3RF1Q7Z6J0 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC19.77■□□□□ 0.76
SH3RF1Q7Z6J0 SDCCAG3P1-201ENST00000589292 1150 ntBASIC19.77■□□□□ 0.76
SH3RF1Q7Z6J0 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC19.77■□□□□ 0.76
SH3RF1Q7Z6J0 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC19.77■□□□□ 0.76
SH3RF1Q7Z6J0 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SH3RF1Q7Z6J0 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
SH3RF1Q7Z6J0 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
SH3RF1Q7Z6J0 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.77■□□□□ 0.75
SH3RF1Q7Z6J0 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC19.76■□□□□ 0.75
SH3RF1Q7Z6J0 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC19.76■□□□□ 0.75
SH3RF1Q7Z6J0 ADM-208ENST00000534464 1640 ntTSL 2 BASIC19.76■□□□□ 0.75
SH3RF1Q7Z6J0 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SH3RF1Q7Z6J0 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SH3RF1Q7Z6J0 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SH3RF1Q7Z6J0 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SH3RF1Q7Z6J0 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC19.76■□□□□ 0.75
SH3RF1Q7Z6J0 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SH3RF1Q7Z6J0 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SH3RF1Q7Z6J0 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SH3RF1Q7Z6J0 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC19.76■□□□□ 0.75
SH3RF1Q7Z6J0 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
SH3RF1Q7Z6J0 COX5BP2-201ENST00000392354 334 ntBASIC19.76■□□□□ 0.75
SH3RF1Q7Z6J0 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC19.76■□□□□ 0.75
SH3RF1Q7Z6J0 AL645939.2-201ENST00000427340 991 ntBASIC19.76■□□□□ 0.75
SH3RF1Q7Z6J0 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC19.76■□□□□ 0.75
SH3RF1Q7Z6J0 SRP19-202ENST00000445150 833 ntTSL 2 BASIC19.76■□□□□ 0.75
SH3RF1Q7Z6J0 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC19.76■□□□□ 0.75
SH3RF1Q7Z6J0 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SH3RF1Q7Z6J0 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC19.76■□□□□ 0.75
SH3RF1Q7Z6J0 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC19.76■□□□□ 0.75
SH3RF1Q7Z6J0 AC005593.1-201ENST00000624894 515 ntBASIC19.76■□□□□ 0.75
SH3RF1Q7Z6J0 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SH3RF1Q7Z6J0 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
SH3RF1Q7Z6J0 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SH3RF1Q7Z6J0 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
SH3RF1Q7Z6J0 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SH3RF1Q7Z6J0 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SH3RF1Q7Z6J0 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
SH3RF1Q7Z6J0 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
SH3RF1Q7Z6J0 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
SH3RF1Q7Z6J0 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SH3RF1Q7Z6J0 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
SH3RF1Q7Z6J0 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
SH3RF1Q7Z6J0 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC19.76■□□□□ 0.75
SH3RF1Q7Z6J0 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SH3RF1Q7Z6J0 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SH3RF1Q7Z6J0 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC19.75■□□□□ 0.75
SH3RF1Q7Z6J0 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
SH3RF1Q7Z6J0 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SH3RF1Q7Z6J0 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SH3RF1Q7Z6J0 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SH3RF1Q7Z6J0 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
SH3RF1Q7Z6J0 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC19.75■□□□□ 0.75
SH3RF1Q7Z6J0 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
SH3RF1Q7Z6J0 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
SH3RF1Q7Z6J0 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
SH3RF1Q7Z6J0 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SH3RF1Q7Z6J0 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SH3RF1Q7Z6J0 AC254562.1-201ENST00000417586 456 ntBASIC19.75■□□□□ 0.75
SH3RF1Q7Z6J0 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC19.75■□□□□ 0.75
SH3RF1Q7Z6J0 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC19.75■□□□□ 0.75
SH3RF1Q7Z6J0 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC19.75■□□□□ 0.75
SH3RF1Q7Z6J0 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SH3RF1Q7Z6J0 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC19.75■□□□□ 0.75
SH3RF1Q7Z6J0 TMED1-207ENST00000591695 809 ntTSL 5 BASIC19.75■□□□□ 0.75
SH3RF1Q7Z6J0 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC19.75■□□□□ 0.75
SH3RF1Q7Z6J0 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SH3RF1Q7Z6J0 MIR1199-201ENST00000621445 119 ntBASIC19.75■□□□□ 0.75
SH3RF1Q7Z6J0 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC19.75■□□□□ 0.75
SH3RF1Q7Z6J0 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SH3RF1Q7Z6J0 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SH3RF1Q7Z6J0 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SH3RF1Q7Z6J0 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SH3RF1Q7Z6J0 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SH3RF1Q7Z6J0 AC016396.2-201ENST00000562575 1417 ntBASIC19.75■□□□□ 0.75
SH3RF1Q7Z6J0 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SH3RF1Q7Z6J0 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
SH3RF1Q7Z6J0 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SH3RF1Q7Z6J0 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC19.74■□□□□ 0.75
SH3RF1Q7Z6J0 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SH3RF1Q7Z6J0 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SH3RF1Q7Z6J0 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SH3RF1Q7Z6J0 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC19.74■□□□□ 0.75
SH3RF1Q7Z6J0 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC19.74■□□□□ 0.75
SH3RF1Q7Z6J0 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
SH3RF1Q7Z6J0 AC079776.2-201ENST00000641154 1609 ntBASIC19.74■□□□□ 0.75
SH3RF1Q7Z6J0 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SH3RF1Q7Z6J0 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SH3RF1Q7Z6J0 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SH3RF1Q7Z6J0 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SH3RF1Q7Z6J0 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SH3RF1Q7Z6J0 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC19.74■□□□□ 0.75
SH3RF1Q7Z6J0 AL035633.1-201ENST00000406139 838 ntBASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms