Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
RFX4Q33E94 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC16.13■□□□□ 0.17
RFX4Q33E94 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RFX4Q33E94 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFX4Q33E94 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
RFX4Q33E94 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFX4Q33E94 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RFX4Q33E94 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFX4Q33E94 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFX4Q33E94 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC16.13■□□□□ 0.17
RFX4Q33E94 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC16.13■□□□□ 0.17
RFX4Q33E94 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RFX4Q33E94 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFX4Q33E94 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFX4Q33E94 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFX4Q33E94 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC16.13■□□□□ 0.17
RFX4Q33E94 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC16.13■□□□□ 0.17
RFX4Q33E94 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RFX4Q33E94 AC124947.2-201ENST00000547118 1133 ntBASIC16.13■□□□□ 0.17
RFX4Q33E94 USF2-205ENST00000594064 1179 ntTSL 2 BASIC16.13■□□□□ 0.17
RFX4Q33E94 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC16.13■□□□□ 0.17
RFX4Q33E94 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFX4Q33E94 CLN6-221ENST00000637494 765 ntTSL 5 BASIC16.13■□□□□ 0.17
RFX4Q33E94 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RFX4Q33E94 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFX4Q33E94 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFX4Q33E94 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFX4Q33E94 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFX4Q33E94 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RFX4Q33E94 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFX4Q33E94 AGK-211ENST00000629555 2765 ntTSL 5 BASIC16.13■□□□□ 0.17
RFX4Q33E94 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFX4Q33E94 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFX4Q33E94 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RFX4Q33E94 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
RFX4Q33E94 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
RFX4Q33E94 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RFX4Q33E94 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC16.12■□□□□ 0.17
RFX4Q33E94 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
RFX4Q33E94 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RFX4Q33E94 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RFX4Q33E94 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RFX4Q33E94 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RFX4Q33E94 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RFX4Q33E94 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RFX4Q33E94 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
RFX4Q33E94 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
RFX4Q33E94 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RFX4Q33E94 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC16.12■□□□□ 0.17
RFX4Q33E94 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC16.12■□□□□ 0.17
RFX4Q33E94 HES2-202ENST00000377836 507 ntTSL 2 BASIC16.12■□□□□ 0.17
RFX4Q33E94 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC16.12■□□□□ 0.17
RFX4Q33E94 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC16.12■□□□□ 0.17
RFX4Q33E94 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC16.12■□□□□ 0.17
RFX4Q33E94 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC16.12■□□□□ 0.17
RFX4Q33E94 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC16.12■□□□□ 0.17
RFX4Q33E94 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RFX4Q33E94 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC16.12■□□□□ 0.17
RFX4Q33E94 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC16.12■□□□□ 0.17
RFX4Q33E94 DET1-205ENST00000558413 583 ntTSL 4 BASIC16.12■□□□□ 0.17
RFX4Q33E94 AC024563.2-201ENST00000603282 481 ntBASIC16.12■□□□□ 0.17
RFX4Q33E94 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC16.12■□□□□ 0.17
RFX4Q33E94 LINC02199-201ENST00000506655 2702 ntBASIC16.12■□□□□ 0.17
RFX4Q33E94 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC16.12■□□□□ 0.17
RFX4Q33E94 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RFX4Q33E94 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
RFX4Q33E94 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RFX4Q33E94 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
RFX4Q33E94 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RFX4Q33E94 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC16.12■□□□□ 0.17
RFX4Q33E94 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
RFX4Q33E94 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
RFX4Q33E94 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RFX4Q33E94 LINC01568-207ENST00000641790 1380 ntBASIC16.12■□□□□ 0.17
RFX4Q33E94 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RFX4Q33E94 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.11■□□□□ 0.17
RFX4Q33E94 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC16.11■□□□□ 0.17
RFX4Q33E94 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RFX4Q33E94 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC16.11■□□□□ 0.17
RFX4Q33E94 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
RFX4Q33E94 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RFX4Q33E94 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RFX4Q33E94 KRT89P-201ENST00000620027 1478 ntBASIC16.11■□□□□ 0.17
RFX4Q33E94 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RFX4Q33E94 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RFX4Q33E94 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RFX4Q33E94 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC16.11■□□□□ 0.17
RFX4Q33E94 AC034232.1-201ENST00000506026 1064 ntBASIC16.11■□□□□ 0.17
RFX4Q33E94 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
RFX4Q33E94 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC16.11■□□□□ 0.17
RFX4Q33E94 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC16.11■□□□□ 0.17
RFX4Q33E94 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC16.11■□□□□ 0.17
RFX4Q33E94 AC141257.4-201ENST00000634557 245 ntBASIC16.11■□□□□ 0.17
RFX4Q33E94 AC136944.6-201ENST00000634818 245 ntBASIC16.11■□□□□ 0.17
RFX4Q33E94 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RFX4Q33E94 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RFX4Q33E94 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
RFX4Q33E94 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RFX4Q33E94 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RFX4Q33E94 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms