Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
SCN4AP35499 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SCN4AP35499 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.15■□□□□ 0.82
SCN4AP35499 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SCN4AP35499 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
SCN4AP35499 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
SCN4AP35499 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
SCN4AP35499 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC20.15■□□□□ 0.82
SCN4AP35499 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SCN4AP35499 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SCN4AP35499 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SCN4AP35499 AL353705.2-201ENST00000428243 662 ntBASIC20.15■□□□□ 0.82
SCN4AP35499 AC011495.1-201ENST00000498085 584 ntBASIC20.15■□□□□ 0.82
SCN4AP35499 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SCN4AP35499 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
SCN4AP35499 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
SCN4AP35499 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.82
SCN4AP35499 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.82
SCN4AP35499 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
SCN4AP35499 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
SCN4AP35499 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SCN4AP35499 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SCN4AP35499 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC20.14■□□□□ 0.81
SCN4AP35499 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SCN4AP35499 HLA-H-201ENST00000383620 1096 ntBASIC20.14■□□□□ 0.81
SCN4AP35499 CENPM-206ENST00000407253 818 ntTSL 2 BASIC20.14■□□□□ 0.81
SCN4AP35499 AC004945.1-201ENST00000416738 983 ntBASIC20.14■□□□□ 0.81
SCN4AP35499 TMEM14DP-201ENST00000422205 345 ntBASIC20.14■□□□□ 0.81
SCN4AP35499 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC20.14■□□□□ 0.81
SCN4AP35499 AC093004.1-201ENST00000508850 424 ntBASIC20.14■□□□□ 0.81
SCN4AP35499 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC20.14■□□□□ 0.81
SCN4AP35499 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC20.14■□□□□ 0.81
SCN4AP35499 CHCHD2P3-201ENST00000603038 451 ntBASIC20.14■□□□□ 0.81
SCN4AP35499 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC20.14■□□□□ 0.81
SCN4AP35499 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC20.14■□□□□ 0.81
SCN4AP35499 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
SCN4AP35499 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC20.14■□□□□ 0.81
SCN4AP35499 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
SCN4AP35499 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC20.13■□□□□ 0.81
SCN4AP35499 AC234783.1-201ENST00000441761 496 ntBASIC20.13■□□□□ 0.81
SCN4AP35499 PACS1-203ENST00000524815 628 ntTSL 4 BASIC20.13■□□□□ 0.81
SCN4AP35499 FAM8A2P-201ENST00000528813 1142 ntBASIC20.13■□□□□ 0.81
SCN4AP35499 AC135586.1-201ENST00000539323 574 ntBASIC20.13■□□□□ 0.81
SCN4AP35499 AC091167.2-201ENST00000579581 588 ntBASIC20.13■□□□□ 0.81
SCN4AP35499 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SCN4AP35499 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
SCN4AP35499 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SCN4AP35499 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC20.13■□□□□ 0.81
SCN4AP35499 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SCN4AP35499 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SCN4AP35499 AL133338.1-201ENST00000565695 1517 ntBASIC20.13■□□□□ 0.81
SCN4AP35499 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SCN4AP35499 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
SCN4AP35499 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
SCN4AP35499 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SCN4AP35499 AC022210.1-201ENST00000449856 793 ntBASIC20.13■□□□□ 0.81
SCN4AP35499 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SCN4AP35499 RN7SL752P-201ENST00000463779 287 ntBASIC20.13■□□□□ 0.81
SCN4AP35499 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC20.13■□□□□ 0.81
SCN4AP35499 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC20.13■□□□□ 0.81
SCN4AP35499 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
SCN4AP35499 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC20.13■□□□□ 0.81
SCN4AP35499 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SCN4AP35499 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
SCN4AP35499 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SCN4AP35499 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC20.12■□□□□ 0.81
SCN4AP35499 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SCN4AP35499 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
SCN4AP35499 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC20.12■□□□□ 0.81
SCN4AP35499 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SCN4AP35499 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
SCN4AP35499 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SCN4AP35499 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC20.12■□□□□ 0.81
SCN4AP35499 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
SCN4AP35499 MTND6P24-201ENST00000440466 518 ntBASIC20.12■□□□□ 0.81
SCN4AP35499 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC20.12■□□□□ 0.81
SCN4AP35499 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC20.12■□□□□ 0.81
SCN4AP35499 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SCN4AP35499 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC20.12■□□□□ 0.81
SCN4AP35499 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
SCN4AP35499 AL139327.4-201ENST00000612362 153 ntBASIC20.12■□□□□ 0.81
SCN4AP35499 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC20.12■□□□□ 0.81
SCN4AP35499 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.12■□□□□ 0.81
SCN4AP35499 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
SCN4AP35499 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC20.12■□□□□ 0.81
SCN4AP35499 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SCN4AP35499 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20.11■□□□□ 0.81
SCN4AP35499 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
SCN4AP35499 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC20.11■□□□□ 0.81
SCN4AP35499 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC20.11■□□□□ 0.81
SCN4AP35499 RPL37AP1-201ENST00000412502 279 ntBASIC20.11■□□□□ 0.81
SCN4AP35499 BCYRN1-201ENST00000418539 200 ntBASIC20.11■□□□□ 0.81
SCN4AP35499 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC20.11■□□□□ 0.81
SCN4AP35499 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SCN4AP35499 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC20.11■□□□□ 0.81
SCN4AP35499 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC20.11■□□□□ 0.81
SCN4AP35499 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC20.11■□□□□ 0.81
SCN4AP35499 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC20.11■□□□□ 0.81
SCN4AP35499 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SCN4AP35499 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms