Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC15.72■□□□□ 0.11
HOXD4P09016 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HOXD4P09016 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC15.72■□□□□ 0.11
HOXD4P09016 SLC4A1APP2-201ENST00000424054 1259 ntBASIC15.72■□□□□ 0.11
HOXD4P09016 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC15.72■□□□□ 0.11
HOXD4P09016 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC15.72■□□□□ 0.11
HOXD4P09016 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC15.72■□□□□ 0.11
HOXD4P09016 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC15.72■□□□□ 0.11
HOXD4P09016 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC15.72■□□□□ 0.11
HOXD4P09016 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC15.72■□□□□ 0.11
HOXD4P09016 AC012640.2-201ENST00000561606 901 ntBASIC15.72■□□□□ 0.11
HOXD4P09016 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
HOXD4P09016 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HOXD4P09016 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
HOXD4P09016 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC15.72■□□□□ 0.11
HOXD4P09016 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC15.72■□□□□ 0.11
HOXD4P09016 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC15.72■□□□□ 0.11
HOXD4P09016 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
HOXD4P09016 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
HOXD4P09016 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HOXD4P09016 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HOXD4P09016 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HOXD4P09016 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
HOXD4P09016 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
HOXD4P09016 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
HOXD4P09016 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC15.71■□□□□ 0.11
HOXD4P09016 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
HOXD4P09016 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
HOXD4P09016 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
HOXD4P09016 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
HOXD4P09016 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
HOXD4P09016 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
HOXD4P09016 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC15.71■□□□□ 0.11
HOXD4P09016 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HOXD4P09016 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HOXD4P09016 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HOXD4P09016 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC15.71■□□□□ 0.11
HOXD4P09016 BOC-212ENST00000485230 2173 ntTSL 2 BASIC15.71■□□□□ 0.11
HOXD4P09016 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
HOXD4P09016 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC15.71■□□□□ 0.11
HOXD4P09016 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HOXD4P09016 METTL26-205ENST00000397666 726 ntTSL 2 BASIC15.71■□□□□ 0.11
HOXD4P09016 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
HOXD4P09016 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
HOXD4P09016 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC15.71■□□□□ 0.11
HOXD4P09016 MED15P5-201ENST00000423150 992 ntBASIC15.71■□□□□ 0.11
HOXD4P09016 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC15.71■□□□□ 0.11
HOXD4P09016 SIGLEC30P-201ENST00000455569 941 ntBASIC15.71■□□□□ 0.11
HOXD4P09016 BX005266.1-201ENST00000473402 457 ntBASIC15.71■□□□□ 0.11
HOXD4P09016 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HOXD4P09016 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC15.71■□□□□ 0.11
HOXD4P09016 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
HOXD4P09016 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC15.71■□□□□ 0.11
HOXD4P09016 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC15.71■□□□□ 0.11
HOXD4P09016 AC034105.1-201ENST00000563488 319 ntBASIC15.71■□□□□ 0.11
HOXD4P09016 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC15.71■□□□□ 0.11
HOXD4P09016 AL356488.2-201ENST00000602755 427 ntBASIC15.71■□□□□ 0.11
HOXD4P09016 AC140113.2-201ENST00000604370 208 ntBASIC15.71■□□□□ 0.11
HOXD4P09016 AL691403.2-201ENST00000618460 490 ntBASIC15.71■□□□□ 0.11
HOXD4P09016 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC15.71■□□□□ 0.11
HOXD4P09016 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC15.71■□□□□ 0.11
HOXD4P09016 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
HOXD4P09016 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HOXD4P09016 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
HOXD4P09016 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
HOXD4P09016 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HOXD4P09016 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
HOXD4P09016 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
HOXD4P09016 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.1
HOXD4P09016 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.1
HOXD4P09016 AL096828.2-201ENST00000567259 1965 ntBASIC15.71■□□□□ 0.1
HOXD4P09016 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
HOXD4P09016 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
HOXD4P09016 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
HOXD4P09016 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXD4P09016 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC15.7■□□□□ 0.1
HOXD4P09016 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HOXD4P09016 SP100-208ENST00000427101 1922 ntTSL 2 BASIC15.7■□□□□ 0.1
HOXD4P09016 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HOXD4P09016 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC15.7■□□□□ 0.1
HOXD4P09016 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXD4P09016 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC15.7■□□□□ 0.1
HOXD4P09016 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC15.7■□□□□ 0.1
HOXD4P09016 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC15.7■□□□□ 0.1
HOXD4P09016 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXD4P09016 FLJ38576-201ENST00000623820 2459 ntBASIC15.7■□□□□ 0.1
HOXD4P09016 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC15.7■□□□□ 0.1
HOXD4P09016 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXD4P09016 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HOXD4P09016 AC068418.2-201ENST00000577309 3703 ntBASIC15.7■□□□□ 0.1
HOXD4P09016 ADM-208ENST00000534464 1640 ntTSL 2 BASIC15.7■□□□□ 0.1
HOXD4P09016 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC15.7■□□□□ 0.1
HOXD4P09016 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HOXD4P09016 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXD4P09016 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC15.7■□□□□ 0.1
HOXD4P09016 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC15.7■□□□□ 0.1
HOXD4P09016 UPF3AP3-201ENST00000420996 769 ntBASIC15.7■□□□□ 0.1
HOXD4P09016 KRT18P27-201ENST00000427733 1299 ntBASIC15.7■□□□□ 0.1
HOXD4P09016 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC15.7■□□□□ 0.1
HOXD4P09016 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms