Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC17.44■□□□□ 0.38
VIMP08670 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VIMP08670 AC112497.1-201ENST00000624824 639 ntBASIC17.44■□□□□ 0.38
VIMP08670 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VIMP08670 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC17.44■□□□□ 0.38
VIMP08670 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VIMP08670 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.44■□□□□ 0.38
VIMP08670 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VIMP08670 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
VIMP08670 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VIMP08670 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
VIMP08670 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
VIMP08670 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VIMP08670 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
VIMP08670 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
VIMP08670 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC17.44■□□□□ 0.38
VIMP08670 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VIMP08670 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VIMP08670 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VIMP08670 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VIMP08670 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
VIMP08670 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC17.43■□□□□ 0.38
VIMP08670 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VIMP08670 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VIMP08670 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC17.43■□□□□ 0.38
VIMP08670 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC17.43■□□□□ 0.38
VIMP08670 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC17.43■□□□□ 0.38
VIMP08670 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VIMP08670 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VIMP08670 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC17.43■□□□□ 0.38
VIMP08670 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VIMP08670 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
VIMP08670 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VIMP08670 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VIMP08670 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VIMP08670 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VIMP08670 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
VIMP08670 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VIMP08670 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VIMP08670 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VIMP08670 AC026366.1-201ENST00000488803 879 ntBASIC17.43■□□□□ 0.38
VIMP08670 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC17.43■□□□□ 0.38
VIMP08670 RNA5SP413-201ENST00000516373 109 ntBASIC17.43■□□□□ 0.38
VIMP08670 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC17.43■□□□□ 0.38
VIMP08670 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC17.43■□□□□ 0.38
VIMP08670 AC008687.5-201ENST00000593746 558 ntBASIC17.43■□□□□ 0.38
VIMP08670 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC17.43■□□□□ 0.38
VIMP08670 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
VIMP08670 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VIMP08670 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
VIMP08670 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VIMP08670 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
VIMP08670 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VIMP08670 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
VIMP08670 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VIMP08670 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VIMP08670 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC17.43■□□□□ 0.38
VIMP08670 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VIMP08670 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VIMP08670 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VIMP08670 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VIMP08670 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VIMP08670 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC17.43■□□□□ 0.38
VIMP08670 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VIMP08670 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VIMP08670 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VIMP08670 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC17.42■□□□□ 0.38
VIMP08670 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VIMP08670 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
VIMP08670 AC126755.1-201ENST00000525846 6405 ntBASIC17.42■□□□□ 0.38
VIMP08670 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
VIMP08670 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC17.42■□□□□ 0.38
VIMP08670 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VIMP08670 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VIMP08670 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.42■□□□□ 0.38
VIMP08670 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VIMP08670 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
VIMP08670 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
VIMP08670 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
VIMP08670 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC17.42■□□□□ 0.38
VIMP08670 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC17.42■□□□□ 0.38
VIMP08670 AC073195.1-201ENST00000607241 877 ntBASIC17.42■□□□□ 0.38
VIMP08670 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VIMP08670 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VIMP08670 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
VIMP08670 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
VIMP08670 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
VIMP08670 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
VIMP08670 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VIMP08670 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
VIMP08670 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
VIMP08670 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
VIMP08670 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
VIMP08670 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VIMP08670 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC17.42■□□□□ 0.38
VIMP08670 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VIMP08670 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VIMP08670 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC17.41■□□□□ 0.38
VIMP08670 AC093525.9-201ENST00000624961 1746 ntBASIC17.41■□□□□ 0.38
VIMP08670 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms