Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
SDC3O75056 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC16.88■□□□□ 0.29
SDC3O75056 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
SDC3O75056 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
SDC3O75056 AC093028.1-201ENST00000622998 982 ntBASIC16.88■□□□□ 0.29
SDC3O75056 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC16.88■□□□□ 0.29
SDC3O75056 AC138028.4-201ENST00000564984 1845 ntBASIC16.88■□□□□ 0.29
SDC3O75056 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
SDC3O75056 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC16.88■□□□□ 0.29
SDC3O75056 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SDC3O75056 AC092919.2-201ENST00000623631 1645 ntBASIC16.88■□□□□ 0.29
SDC3O75056 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SDC3O75056 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC16.88■□□□□ 0.29
SDC3O75056 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC16.88■□□□□ 0.29
SDC3O75056 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC16.88■□□□□ 0.29
SDC3O75056 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SDC3O75056 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SDC3O75056 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC16.87■□□□□ 0.29
SDC3O75056 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SDC3O75056 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC16.87■□□□□ 0.29
SDC3O75056 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
SDC3O75056 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC16.87■□□□□ 0.29
SDC3O75056 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SDC3O75056 FZD10-202ENST00000539839 3282 ntBASIC16.87■□□□□ 0.29
SDC3O75056 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
SDC3O75056 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
SDC3O75056 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SDC3O75056 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SDC3O75056 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC16.87■□□□□ 0.29
SDC3O75056 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
SDC3O75056 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC16.87■□□□□ 0.29
SDC3O75056 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SDC3O75056 AC090340.1-201ENST00000620778 4980 ntBASIC16.87■□□□□ 0.29
SDC3O75056 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SDC3O75056 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC16.87■□□□□ 0.29
SDC3O75056 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SDC3O75056 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SDC3O75056 AL645939.2-201ENST00000427340 991 ntBASIC16.87■□□□□ 0.29
SDC3O75056 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC16.87■□□□□ 0.29
SDC3O75056 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
SDC3O75056 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SDC3O75056 MNT-208ENST00000575394 606 ntTSL 4 BASIC16.87■□□□□ 0.29
SDC3O75056 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.87■□□□□ 0.29
SDC3O75056 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC16.87■□□□□ 0.29
SDC3O75056 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
SDC3O75056 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC16.87■□□□□ 0.29
SDC3O75056 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC16.87■□□□□ 0.29
SDC3O75056 REM2-202ENST00000536884 1331 ntTSL 2 BASIC16.87■□□□□ 0.29
SDC3O75056 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SDC3O75056 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
SDC3O75056 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
SDC3O75056 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC16.87■□□□□ 0.29
SDC3O75056 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
SDC3O75056 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SDC3O75056 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SDC3O75056 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SDC3O75056 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SDC3O75056 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.86■□□□□ 0.29
SDC3O75056 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
SDC3O75056 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SDC3O75056 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC16.86■□□□□ 0.29
SDC3O75056 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SDC3O75056 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
SDC3O75056 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SDC3O75056 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SDC3O75056 PNMT-202ENST00000394246 821 ntTSL 2 BASIC16.86■□□□□ 0.29
SDC3O75056 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC16.86■□□□□ 0.29
SDC3O75056 TSEN15P1-201ENST00000423257 515 ntBASIC16.86■□□□□ 0.29
SDC3O75056 AL513480.1-201ENST00000451731 511 ntBASIC16.86■□□□□ 0.29
SDC3O75056 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.86■□□□□ 0.29
SDC3O75056 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
SDC3O75056 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC16.86■□□□□ 0.29
SDC3O75056 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC16.86■□□□□ 0.29
SDC3O75056 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC16.86■□□□□ 0.29
SDC3O75056 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC16.86■□□□□ 0.29
SDC3O75056 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
SDC3O75056 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
SDC3O75056 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC16.86■□□□□ 0.29
SDC3O75056 AC068137.2-201ENST00000605408 478 ntBASIC16.86■□□□□ 0.29
SDC3O75056 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC16.86■□□□□ 0.29
SDC3O75056 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC16.86■□□□□ 0.29
SDC3O75056 AC092902.6-201ENST00000641783 218 ntBASIC16.86■□□□□ 0.29
SDC3O75056 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
SDC3O75056 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SDC3O75056 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
SDC3O75056 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SDC3O75056 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC16.86■□□□□ 0.29
SDC3O75056 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SDC3O75056 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SDC3O75056 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
SDC3O75056 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SDC3O75056 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC16.86■□□□□ 0.29
SDC3O75056 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SDC3O75056 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
SDC3O75056 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
SDC3O75056 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
SDC3O75056 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
SDC3O75056 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
SDC3O75056 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
SDC3O75056 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms