Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC17.34■□□□□ 0.37
SHOX2O60902 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHOX2O60902 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHOX2O60902 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC17.34■□□□□ 0.37
SHOX2O60902 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SHOX2O60902 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SHOX2O60902 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SHOX2O60902 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.33■□□□□ 0.37
SHOX2O60902 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC17.33■□□□□ 0.37
SHOX2O60902 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
SHOX2O60902 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SHOX2O60902 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
SHOX2O60902 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
SHOX2O60902 AMT-250ENST00000637682 1823 ntTSL 5 BASIC17.33■□□□□ 0.37
SHOX2O60902 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SHOX2O60902 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SHOX2O60902 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
SHOX2O60902 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SHOX2O60902 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SHOX2O60902 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SHOX2O60902 AC010491.1-201ENST00000563101 2797 ntBASIC17.33■□□□□ 0.36
SHOX2O60902 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
SHOX2O60902 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC17.33■□□□□ 0.36
SHOX2O60902 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SHOX2O60902 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
SHOX2O60902 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC17.33■□□□□ 0.36
SHOX2O60902 LY6E-205ENST00000519611 635 ntTSL 3 BASIC17.33■□□□□ 0.36
SHOX2O60902 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.36
SHOX2O60902 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC17.33■□□□□ 0.36
SHOX2O60902 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC17.33■□□□□ 0.36
SHOX2O60902 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
SHOX2O60902 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC17.33■□□□□ 0.36
SHOX2O60902 AC008687.5-201ENST00000593746 558 ntBASIC17.33■□□□□ 0.36
SHOX2O60902 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
SHOX2O60902 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SHOX2O60902 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
SHOX2O60902 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC17.33■□□□□ 0.36
SHOX2O60902 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SHOX2O60902 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SHOX2O60902 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.36
SHOX2O60902 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SHOX2O60902 AL645728.1-201ENST00000366221 2101 ntBASIC17.33■□□□□ 0.36
SHOX2O60902 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC17.33■□□□□ 0.36
SHOX2O60902 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC17.33■□□□□ 0.36
SHOX2O60902 AL596087.1-201ENST00000400979 1969 ntBASIC17.33■□□□□ 0.36
SHOX2O60902 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SHOX2O60902 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SHOX2O60902 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SHOX2O60902 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SHOX2O60902 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SHOX2O60902 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC17.33■□□□□ 0.36
SHOX2O60902 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.32■□□□□ 0.36
SHOX2O60902 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SHOX2O60902 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SHOX2O60902 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC17.32■□□□□ 0.36
SHOX2O60902 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
SHOX2O60902 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SHOX2O60902 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
SHOX2O60902 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
SHOX2O60902 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SHOX2O60902 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
SHOX2O60902 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SHOX2O60902 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SHOX2O60902 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SHOX2O60902 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC17.32■□□□□ 0.36
SHOX2O60902 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC17.32■□□□□ 0.36
SHOX2O60902 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SHOX2O60902 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SHOX2O60902 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SHOX2O60902 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SHOX2O60902 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SHOX2O60902 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SHOX2O60902 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SHOX2O60902 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SHOX2O60902 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SHOX2O60902 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SHOX2O60902 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SHOX2O60902 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC17.32■□□□□ 0.36
SHOX2O60902 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SHOX2O60902 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHOX2O60902 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC17.31■□□□□ 0.36
SHOX2O60902 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHOX2O60902 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC17.31■□□□□ 0.36
SHOX2O60902 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
SHOX2O60902 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC17.31■□□□□ 0.36
SHOX2O60902 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHOX2O60902 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHOX2O60902 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
SHOX2O60902 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHOX2O60902 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHOX2O60902 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SHOX2O60902 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHOX2O60902 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHOX2O60902 SERF2-207ENST00000409614 582 ntTSL 2 BASIC17.31■□□□□ 0.36
SHOX2O60902 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
SHOX2O60902 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC17.31■□□□□ 0.36
SHOX2O60902 RPS2P4-201ENST00000476944 856 ntBASIC17.31■□□□□ 0.36
SHOX2O60902 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC17.31■□□□□ 0.36
SHOX2O60902 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SHOX2O60902 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms