Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CNTN3Q9P232 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CNTN3Q9P232 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CNTN3Q9P232 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
CNTN3Q9P232 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC18.58■□□□□ 0.56
CNTN3Q9P232 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CNTN3Q9P232 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
CNTN3Q9P232 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CNTN3Q9P232 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC18.58■□□□□ 0.56
CNTN3Q9P232 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC18.58■□□□□ 0.56
CNTN3Q9P232 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CNTN3Q9P232 HNRNPA1P28-201ENST00000424481 961 ntBASIC18.58■□□□□ 0.56
CNTN3Q9P232 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC18.58■□□□□ 0.56
CNTN3Q9P232 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC18.58■□□□□ 0.56
CNTN3Q9P232 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CNTN3Q9P232 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CNTN3Q9P232 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CNTN3Q9P232 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CNTN3Q9P232 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CNTN3Q9P232 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CNTN3Q9P232 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC18.58■□□□□ 0.56
CNTN3Q9P232 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC18.58■□□□□ 0.56
CNTN3Q9P232 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CNTN3Q9P232 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
CNTN3Q9P232 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CNTN3Q9P232 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18.57■□□□□ 0.56
CNTN3Q9P232 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CNTN3Q9P232 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CNTN3Q9P232 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CNTN3Q9P232 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CNTN3Q9P232 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC18.57■□□□□ 0.56
CNTN3Q9P232 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CNTN3Q9P232 BX842568.4-201ENST00000421222 227 ntBASIC18.57■□□□□ 0.56
CNTN3Q9P232 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC18.57■□□□□ 0.56
CNTN3Q9P232 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC18.57■□□□□ 0.56
CNTN3Q9P232 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC18.57■□□□□ 0.56
CNTN3Q9P232 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
CNTN3Q9P232 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC18.57■□□□□ 0.56
CNTN3Q9P232 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CNTN3Q9P232 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CNTN3Q9P232 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
CNTN3Q9P232 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
CNTN3Q9P232 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC18.57■□□□□ 0.56
CNTN3Q9P232 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CNTN3Q9P232 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC18.57■□□□□ 0.56
CNTN3Q9P232 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CNTN3Q9P232 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
CNTN3Q9P232 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC18.56■□□□□ 0.56
CNTN3Q9P232 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC18.56■□□□□ 0.56
CNTN3Q9P232 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CNTN3Q9P232 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC18.56■□□□□ 0.56
CNTN3Q9P232 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CNTN3Q9P232 SLC25A1P3-201ENST00000395415 828 ntBASIC18.56■□□□□ 0.56
CNTN3Q9P232 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC18.56■□□□□ 0.56
CNTN3Q9P232 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CNTN3Q9P232 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CNTN3Q9P232 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC18.56■□□□□ 0.56
CNTN3Q9P232 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC18.56■□□□□ 0.56
CNTN3Q9P232 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC18.56■□□□□ 0.56
CNTN3Q9P232 POLD4-207ENST00000531239 584 ntTSL 2 BASIC18.56■□□□□ 0.56
CNTN3Q9P232 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC18.56■□□□□ 0.56
CNTN3Q9P232 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CNTN3Q9P232 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CNTN3Q9P232 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC18.56■□□□□ 0.56
CNTN3Q9P232 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CNTN3Q9P232 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CNTN3Q9P232 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CNTN3Q9P232 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CNTN3Q9P232 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CNTN3Q9P232 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC18.55■□□□□ 0.56
CNTN3Q9P232 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CNTN3Q9P232 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CNTN3Q9P232 BOC-212ENST00000485230 2173 ntTSL 2 BASIC18.55■□□□□ 0.56
CNTN3Q9P232 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CNTN3Q9P232 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CNTN3Q9P232 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CNTN3Q9P232 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CNTN3Q9P232 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CNTN3Q9P232 KRT18P13-201ENST00000400056 1290 ntBASIC18.55■□□□□ 0.56
CNTN3Q9P232 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC18.55■□□□□ 0.56
CNTN3Q9P232 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC18.55■□□□□ 0.56
CNTN3Q9P232 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
CNTN3Q9P232 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CNTN3Q9P232 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CNTN3Q9P232 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.55■□□□□ 0.56
CNTN3Q9P232 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CNTN3Q9P232 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CNTN3Q9P232 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.54■□□□□ 0.56
CNTN3Q9P232 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CNTN3Q9P232 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
CNTN3Q9P232 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
CNTN3Q9P232 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CNTN3Q9P232 HNRNPRP1-201ENST00000453465 1695 ntBASIC18.54■□□□□ 0.56
CNTN3Q9P232 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
CNTN3Q9P232 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
CNTN3Q9P232 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
CNTN3Q9P232 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CNTN3Q9P232 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CNTN3Q9P232 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
CNTN3Q9P232 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 11.1 ms