Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHFRQ96EP1 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC17.55■□□□□ 0.4
CHFRQ96EP1 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC17.55■□□□□ 0.4
CHFRQ96EP1 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC17.55■□□□□ 0.4
CHFRQ96EP1 SPCS2P1-201ENST00000561636 679 ntBASIC17.55■□□□□ 0.4
CHFRQ96EP1 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CHFRQ96EP1 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHFRQ96EP1 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC17.55■□□□□ 0.4
CHFRQ96EP1 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CHFRQ96EP1 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHFRQ96EP1 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHFRQ96EP1 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.55■□□□□ 0.4
CHFRQ96EP1 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHFRQ96EP1 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHFRQ96EP1 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHFRQ96EP1 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHFRQ96EP1 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHFRQ96EP1 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHFRQ96EP1 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CHFRQ96EP1 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CHFRQ96EP1 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC17.55■□□□□ 0.4
CHFRQ96EP1 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CHFRQ96EP1 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
CHFRQ96EP1 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CHFRQ96EP1 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
CHFRQ96EP1 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
CHFRQ96EP1 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CHFRQ96EP1 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.54■□□□□ 0.4
CHFRQ96EP1 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
CHFRQ96EP1 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CHFRQ96EP1 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CHFRQ96EP1 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC17.54■□□□□ 0.4
CHFRQ96EP1 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC17.54■□□□□ 0.4
CHFRQ96EP1 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
CHFRQ96EP1 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
CHFRQ96EP1 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CHFRQ96EP1 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.54■□□□□ 0.4
CHFRQ96EP1 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
CHFRQ96EP1 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CHFRQ96EP1 SYS1-203ENST00000414310 795 ntTSL 3 BASIC17.54■□□□□ 0.4
CHFRQ96EP1 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CHFRQ96EP1 FAM8A3P-201ENST00000427218 844 ntBASIC17.54■□□□□ 0.4
CHFRQ96EP1 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CHFRQ96EP1 AC004449.1-201ENST00000564240 433 ntBASIC17.54■□□□□ 0.4
CHFRQ96EP1 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CHFRQ96EP1 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC17.54■□□□□ 0.4
CHFRQ96EP1 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC17.54■□□□□ 0.4
CHFRQ96EP1 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CHFRQ96EP1 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17.54■□□□□ 0.4
CHFRQ96EP1 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
CHFRQ96EP1 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
CHFRQ96EP1 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.54■□□□□ 0.4
CHFRQ96EP1 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CHFRQ96EP1 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CHFRQ96EP1 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.54■□□□□ 0.4
CHFRQ96EP1 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CHFRQ96EP1 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CHFRQ96EP1 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC17.54■□□□□ 0.4
CHFRQ96EP1 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC17.53■□□□□ 0.4
CHFRQ96EP1 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CHFRQ96EP1 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC17.53■□□□□ 0.4
CHFRQ96EP1 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17.53■□□□□ 0.4
CHFRQ96EP1 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC17.53■□□□□ 0.4
CHFRQ96EP1 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CHFRQ96EP1 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CHFRQ96EP1 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC17.53■□□□□ 0.4
CHFRQ96EP1 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC17.53■□□□□ 0.4
CHFRQ96EP1 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CHFRQ96EP1 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC17.53■□□□□ 0.4
CHFRQ96EP1 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CHFRQ96EP1 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC17.53■□□□□ 0.4
CHFRQ96EP1 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CHFRQ96EP1 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CHFRQ96EP1 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CHFRQ96EP1 AC093512.1-201ENST00000617969 520 ntBASIC17.53■□□□□ 0.4
CHFRQ96EP1 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CHFRQ96EP1 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC17.53■□□□□ 0.4
CHFRQ96EP1 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CHFRQ96EP1 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CHFRQ96EP1 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC17.53■□□□□ 0.4
CHFRQ96EP1 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CHFRQ96EP1 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC17.53■□□□□ 0.4
CHFRQ96EP1 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
CHFRQ96EP1 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
CHFRQ96EP1 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CHFRQ96EP1 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC17.53■□□□□ 0.4
CHFRQ96EP1 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CHFRQ96EP1 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
CHFRQ96EP1 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC17.52■□□□□ 0.4
CHFRQ96EP1 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC17.52■□□□□ 0.4
CHFRQ96EP1 LINC00304-203ENST00000565008 1864 ntBASIC17.52■□□□□ 0.4
CHFRQ96EP1 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CHFRQ96EP1 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC17.52■□□□□ 0.4
CHFRQ96EP1 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CHFRQ96EP1 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CHFRQ96EP1 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CHFRQ96EP1 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC17.52■□□□□ 0.4
CHFRQ96EP1 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CHFRQ96EP1 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CHFRQ96EP1 WDR53-203ENST00000429115 683 ntTSL 2 BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 70 ms