Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 MTDHP4-201ENST00000600287 670 ntBASIC16.77■□□□□ 0.28
CLIP3Q96DZ5 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CLIP3Q96DZ5 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC16.77■□□□□ 0.28
CLIP3Q96DZ5 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLIP3Q96DZ5 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CLIP3Q96DZ5 MED29-202ENST00000594368 1471 ntTSL 2 BASIC16.77■□□□□ 0.28
CLIP3Q96DZ5 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC16.77■□□□□ 0.28
CLIP3Q96DZ5 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
CLIP3Q96DZ5 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CLIP3Q96DZ5 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC16.77■□□□□ 0.27
CLIP3Q96DZ5 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CLIP3Q96DZ5 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC16.77■□□□□ 0.27
CLIP3Q96DZ5 HLA-J-201ENST00000462773 1622 ntBASIC16.77■□□□□ 0.27
CLIP3Q96DZ5 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.27
CLIP3Q96DZ5 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
CLIP3Q96DZ5 AC135050.7-201ENST00000624508 2218 ntBASIC16.77■□□□□ 0.27
CLIP3Q96DZ5 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CLIP3Q96DZ5 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
CLIP3Q96DZ5 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
CLIP3Q96DZ5 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC16.77■□□□□ 0.27
CLIP3Q96DZ5 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
CLIP3Q96DZ5 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CLIP3Q96DZ5 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CLIP3Q96DZ5 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
CLIP3Q96DZ5 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CLIP3Q96DZ5 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
CLIP3Q96DZ5 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CLIP3Q96DZ5 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CLIP3Q96DZ5 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CLIP3Q96DZ5 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CLIP3Q96DZ5 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CLIP3Q96DZ5 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CLIP3Q96DZ5 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CLIP3Q96DZ5 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
CLIP3Q96DZ5 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CLIP3Q96DZ5 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CLIP3Q96DZ5 COX5BP2-201ENST00000392354 334 ntBASIC16.76■□□□□ 0.27
CLIP3Q96DZ5 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CLIP3Q96DZ5 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC16.76■□□□□ 0.27
CLIP3Q96DZ5 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC16.76■□□□□ 0.27
CLIP3Q96DZ5 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC16.76■□□□□ 0.27
CLIP3Q96DZ5 PAM16-208ENST00000573553 722 ntTSL 2 BASIC16.76■□□□□ 0.27
CLIP3Q96DZ5 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC16.76■□□□□ 0.27
CLIP3Q96DZ5 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CLIP3Q96DZ5 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC16.76■□□□□ 0.27
CLIP3Q96DZ5 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC16.76■□□□□ 0.27
CLIP3Q96DZ5 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
CLIP3Q96DZ5 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
CLIP3Q96DZ5 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CLIP3Q96DZ5 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CLIP3Q96DZ5 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CLIP3Q96DZ5 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC16.76■□□□□ 0.27
CLIP3Q96DZ5 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC16.76■□□□□ 0.27
CLIP3Q96DZ5 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC16.76■□□□□ 0.27
CLIP3Q96DZ5 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CLIP3Q96DZ5 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC16.76■□□□□ 0.27
CLIP3Q96DZ5 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC16.76■□□□□ 0.27
CLIP3Q96DZ5 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CLIP3Q96DZ5 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CLIP3Q96DZ5 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CLIP3Q96DZ5 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CLIP3Q96DZ5 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CLIP3Q96DZ5 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CLIP3Q96DZ5 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC16.76■□□□□ 0.27
CLIP3Q96DZ5 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CLIP3Q96DZ5 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC16.75■□□□□ 0.27
CLIP3Q96DZ5 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
CLIP3Q96DZ5 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLIP3Q96DZ5 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC16.75■□□□□ 0.27
CLIP3Q96DZ5 SIRPAP1-201ENST00000448467 1770 ntBASIC16.75■□□□□ 0.27
CLIP3Q96DZ5 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CLIP3Q96DZ5 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLIP3Q96DZ5 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CLIP3Q96DZ5 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
CLIP3Q96DZ5 BX005266.1-201ENST00000473402 457 ntBASIC16.75■□□□□ 0.27
CLIP3Q96DZ5 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC16.75■□□□□ 0.27
CLIP3Q96DZ5 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CLIP3Q96DZ5 SLC25A1P1-201ENST00000528351 927 ntBASIC16.75■□□□□ 0.27
CLIP3Q96DZ5 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC16.75■□□□□ 0.27
CLIP3Q96DZ5 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC16.75■□□□□ 0.27
CLIP3Q96DZ5 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CLIP3Q96DZ5 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC16.75■□□□□ 0.27
CLIP3Q96DZ5 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CLIP3Q96DZ5 AC116407.3-201ENST00000623905 1129 ntBASIC16.75■□□□□ 0.27
CLIP3Q96DZ5 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
CLIP3Q96DZ5 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC16.75■□□□□ 0.27
CLIP3Q96DZ5 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CLIP3Q96DZ5 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC16.75■□□□□ 0.27
CLIP3Q96DZ5 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLIP3Q96DZ5 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CLIP3Q96DZ5 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC16.75■□□□□ 0.27
CLIP3Q96DZ5 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC16.75■□□□□ 0.27
CLIP3Q96DZ5 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLIP3Q96DZ5 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLIP3Q96DZ5 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC16.75■□□□□ 0.27
CLIP3Q96DZ5 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLIP3Q96DZ5 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC16.75■□□□□ 0.27
CLIP3Q96DZ5 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLIP3Q96DZ5 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLIP3Q96DZ5 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms