Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 ASAH1-222ENST00000636160 2328 ntTSL 516.69■□□□□ 0.261e-6■□□□□ 10.2
UPF1Q92900 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC16.13■□□□□ 0.171e-6■□□□□ 10.2
UPF1Q92900 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC15.8■□□□□ 0.121e-6■□□□□ 10.2
UPF1Q92900 ASAH1-245ENST00000637244 3151 ntTSL 1 (best)14.11□□□□□ -0.151e-6■□□□□ 10.2
UPF1Q92900 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.151e-6■□□□□ 10.2
UPF1Q92900 ASAH1-269ENST00000638069 3068 ntTSL 512.92□□□□□ -0.341e-6■□□□□ 10.2
UPF1Q92900 ASAH1-268ENST00000638028 2393 ntTSL 29.02□□□□□ -0.961e-6■□□□□ 10.2
UPF1Q92900 ASAH1-246ENST00000637343 3671 ntTSL 48.82□□□□□ -11e-6■□□□□ 10.2
UPF1Q92900 ASAH1-257ENST00000637752 2708 nt8.8□□□□□ -11e-6■□□□□ 10.2
UPF1Q92900 ASAH1-218ENST00000636009 2148 ntTSL 58.64□□□□□ -1.031e-6■□□□□ 10.2
UPF1Q92900 ASAH1-206ENST00000518746 3870 ntTSL 28.08□□□□□ -1.121e-6■□□□□ 10.2
UPF1Q92900 ASAH1-214ENST00000635756 1589 ntTSL 58.01□□□□□ -1.131e-6■□□□□ 10.2
UPF1Q92900 ASAH1-220ENST00000636050 2546 ntTSL 58.01□□□□□ -1.131e-6■□□□□ 10.2
UPF1Q92900 ASAH1-203ENST00000381733 2512 ntTSL 1 (best) BASIC7.93□□□□□ -1.141e-6■□□□□ 10.2
UPF1Q92900 ASAH1-253ENST00000637609 4981 ntTSL 57.78□□□□□ -1.161e-6■□□□□ 10.2
UPF1Q92900 ASAH1-230ENST00000636563 1891 ntTSL 57.48□□□□□ -1.211e-6■□□□□ 10.2
UPF1Q92900 ASAH1-242ENST00000637014 2626 ntTSL 27.18□□□□□ -1.261e-6■□□□□ 10.2
UPF1Q92900 ASAH1-262ENST00000637857 2585 ntTSL 57.14□□□□□ -1.271e-6■□□□□ 10.2
UPF1Q92900 ASAH1-267ENST00000637991 2399 ntTSL 5 BASIC6.99□□□□□ -1.291e-6■□□□□ 10.2
UPF1Q92900 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC6.91□□□□□ -1.31e-6■□□□□ 10.2
UPF1Q92900 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.39□□□□□ -1.711e-6■□□□□ 10.2
UPF1Q92900 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC27■■□□□ 1.915e-12■□□□□ 10.2
UPF1Q92900 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC25.8■■□□□ 1.725e-12■□□□□ 10.2
UPF1Q92900 MAD2L1-203ENST00000504707 764 ntTSL 222.13■■□□□ 1.135e-12■□□□□ 10.2
UPF1Q92900 MAD2L1-205ENST00000512484 626 ntTSL 211.93□□□□□ -0.55e-12■□□□□ 10.2
UPF1Q92900 GAS5-209ENST00000430245 723 ntTSL 3 BASIC18.29■□□□□ 0.522e-21■□□□□ 10.2
UPF1Q92900 GAS5-222ENST00000451607 1007 ntTSL 5 BASIC14.42□□□□□ -0.12e-21■□□□□ 10.2
UPF1Q92900 GAS5-214ENST00000436656 822 ntTSL 313.55□□□□□ -0.242e-21■□□□□ 10.2
UPF1Q92900 GAS5-224ENST00000454068 688 ntTSL 5 BASIC12.85□□□□□ -0.352e-21■□□□□ 10.2
UPF1Q92900 GAS5-210ENST00000431268 1698 ntTSL 212.14□□□□□ -0.472e-21■□□□□ 10.2
UPF1Q92900 GAS5-219ENST00000449289 542 ntTSL 3 BASIC11.62□□□□□ -0.552e-21■□□□□ 10.2
UPF1Q92900 GAS5-220ENST00000449589 712 ntTSL 311.62□□□□□ -0.552e-21■□□□□ 10.2
UPF1Q92900 GAS5-228ENST00000456812 723 ntTSL 39.43□□□□□ -0.92e-21■□□□□ 10.2
UPF1Q92900 GAS5-225ENST00000454813 621 ntTSL 39.42□□□□□ -0.92e-21■□□□□ 10.2
UPF1Q92900 GAS5-212ENST00000434796 575 ntTSL 29.15□□□□□ -0.942e-21■□□□□ 10.2
UPF1Q92900 GAS5-206ENST00000422183 745 ntTSL 29.11□□□□□ -0.952e-21■□□□□ 10.2
UPF1Q92900 GAS5-215ENST00000442067 1114 ntTSL 28.58□□□□□ -1.042e-21■□□□□ 10.2
UPF1Q92900 GAS5-218ENST00000448718 565 ntTSL 2 BASIC8.4□□□□□ -1.062e-21■□□□□ 10.2
UPF1Q92900 GAS5-201ENST00000412059 979 ntTSL 58.23□□□□□ -1.092e-21■□□□□ 10.2
UPF1Q92900 GAS5-207ENST00000422207 643 ntTSL 28.22□□□□□ -1.092e-21■□□□□ 10.2
UPF1Q92900 GAS5-217ENST00000444470 424 ntTSL 28.05□□□□□ -1.122e-21■□□□□ 10.2
UPF1Q92900 GAS5-202ENST00000414075 413 ntTSL 2 BASIC8.01□□□□□ -1.132e-21■□□□□ 10.2
UPF1Q92900 GAS5-223ENST00000452197 483 ntTSL 3 BASIC7.78□□□□□ -1.162e-21■□□□□ 10.2
UPF1Q92900 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC7.32□□□□□ -1.242e-21■□□□□ 10.2
UPF1Q92900 GAS5-205ENST00000422008 497 ntTSL 35.8□□□□□ -1.482e-21■□□□□ 10.2
UPF1Q92900 GAS5-213ENST00000436285 772 ntTSL 25.41□□□□□ -1.542e-21■□□□□ 10.2
UPF1Q92900 NCSTN-212ENST00000469159 856 ntTSL 213.18□□□□□ -0.32e-11■□□□□ 10.2
UPF1Q92900 FAM129A-203ENST00000461167 904 ntTSL 313.18□□□□□ -0.32e-7■□□□□ 10.2
UPF1Q92900 FAM129A-204ENST00000487074 3118 ntTSL 59.85□□□□□ -0.832e-7■□□□□ 10.2
UPF1Q92900 MSL1-207ENST00000580086 2638 ntTSL 27.49□□□□□ -1.212e-7■□□□□ 10.2
UPF1Q92900 MSL1-201ENST00000339569 3424 ntTSL 26.08□□□□□ -1.442e-7■□□□□ 10.2
UPF1Q92900 HNRNPA2B1-203ENST00000360787 1724 ntTSL 516.19■□□□□ 0.182e-10■□□□□ 10.2
UPF1Q92900 TRIM4-201ENST00000349062 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.032e-10■□□□□ 10.2
UPF1Q92900 HNRNPA2B1-204ENST00000463181 6284 ntTSL 213.75□□□□□ -0.212e-10■□□□□ 10.2
UPF1Q92900 HNRNPA2B1-205ENST00000476233 1220 ntTSL 1 (best)13.69□□□□□ -0.222e-10■□□□□ 10.2
UPF1Q92900 TRIM4-203ENST00000355947 3383 ntAPPRIS P4 TSL 1 (best) BASIC12.95□□□□□ -0.342e-10■□□□□ 10.2
UPF1Q92900 HNRNPA2B1-208ENST00000618183 3539 ntTSL 5 BASIC10.94□□□□□ -0.662e-10■□□□□ 10.2
UPF1Q92900 TRIM4-204ENST00000447480 639 ntTSL 39.64□□□□□ -0.872e-10■□□□□ 10.2
UPF1Q92900 HNRNPA2B1-201ENST00000354667 3664 ntAPPRIS ALT1 TSL 1 (best) BASIC8.6□□□□□ -1.032e-10■□□□□ 10.2
UPF1Q92900 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.071e-6■□□□□ 10.2
UPF1Q92900 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.33■□□□□ 0.522e-7■□□□□ 10.2
UPF1Q92900 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.727e-8■□□□□ 10.1
UPF1Q92900 AC010997.3-201ENST00000418818 502 ntTSL 3 BASIC17.37■□□□□ 0.377e-8■□□□□ 10.1
UPF1Q92900 RPE-206ENST00000429921 2511 ntTSL 1 (best) BASIC11.13□□□□□ -0.631e-6■□□□□ 10.1
UPF1Q92900 RPE-202ENST00000359429 2569 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.681e-6■□□□□ 10.1
UPF1Q92900 RPE-216ENST00000454822 2130 ntTSL 2 BASIC9.85□□□□□ -0.831e-6■□□□□ 10.1
UPF1Q92900 RPE-201ENST00000354506 3165 ntTSL 2 BASIC9.29□□□□□ -0.921e-6■□□□□ 10.1
UPF1Q92900 LINC00958-203ENST00000527945 1121 ntTSL 2 BASIC13.1□□□□□ -0.314e-18■□□□□ 10.1
UPF1Q92900 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.595e-9■□□□□ 10.1
UPF1Q92900 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC32.1■■■□□ 2.733e-7■□□□□ 10.1
UPF1Q92900 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.663e-7■□□□□ 10.1
UPF1Q92900 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC31.32■■■□□ 2.63e-7■□□□□ 10.1
UPF1Q92900 AL136531.2-201ENST00000618770 1164 ntTSL 225.69■■□□□ 1.73e-7■□□□□ 10.1
UPF1Q92900 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC22.13■■□□□ 1.133e-7■□□□□ 10.1
UPF1Q92900 FKBP1A-207ENST00000474657 641 ntTSL 217.41■□□□□ 0.383e-7■□□□□ 10.1
UPF1Q92900 SURF6-202ENST00000468290 935 ntTSL 226.45■■□□□ 1.821e-8■□□□□ 10.1
UPF1Q92900 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.282e-8■□□□□ 10.1
UPF1Q92900 TNFRSF10D-201ENST00000312584 3538 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.992e-9■□□□□ 10.1
UPF1Q92900 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.662e-8■□□□□ 10.1
UPF1Q92900 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC28.27■■■□□ 2.129e-9■□□□□ 10.1
UPF1Q92900 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.547e-7■□□□□ 10.1
UPF1Q92900 C19orf47-209ENST00000584868 583 ntTSL 221.45■■□□□ 1.029e-9■□□□□ 10.1
UPF1Q92900 C19orf47-203ENST00000577617 550 ntTSL 320.98■□□□□ 0.959e-9■□□□□ 10.1
UPF1Q92900 C19orf47-207ENST00000582734 1977 ntTSL 218.3■□□□□ 0.529e-9■□□□□ 10.1
UPF1Q92900 ATP5L-202ENST00000524422 720 ntTSL 3 BASIC11.55□□□□□ -0.567e-7■□□□□ 10.1
UPF1Q92900 ATP5L-203ENST00000527186 1582 ntTSL 29.13□□□□□ -0.957e-7■□□□□ 10.1
UPF1Q92900 ATP5L-206ENST00000529790 900 ntTSL 28.27□□□□□ -1.097e-7■□□□□ 10.1
UPF1Q92900 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.086e-17■□□□□ 10.1
UPF1Q92900 RAD23B-205ENST00000457811 811 ntTSL 312.16□□□□□ -0.466e-17■□□□□ 10.1
UPF1Q92900 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC8.02□□□□□ -1.136e-17■□□□□ 10.1
UPF1Q92900 COL9A3-207ENST00000467819 993 ntTSL 1 (best)31.2■■■□□ 2.597e-13■□□□□ 10.1
UPF1Q92900 COL9A3-203ENST00000462700 1237 ntTSL 326.22■■□□□ 1.797e-13■□□□□ 10.1
UPF1Q92900 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.927e-13■□□□□ 10.1
UPF1Q92900 COL9A3-205ENST00000466192 2194 ntTSL 220.62■□□□□ 0.897e-13■□□□□ 10.1
UPF1Q92900 CD164-210ENST00000512821 964 ntTSL 2 BASIC18.83■□□□□ 0.63e-10■□□□□ 10.1
UPF1Q92900 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC28.38■■■□□ 2.138e-20■□□□□ 10.1
UPF1Q92900 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC28.38■■■□□ 2.138e-20■□□□□ 10.1
UPF1Q92900 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC21.56■■□□□ 1.048e-20■□□□□ 10.1
UPF1Q92900 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.068e-20■□□□□ 10.1
UPF1Q92900 ANK1-209ENST00000520299 3587 ntTSL 210.13□□□□□ -0.798e-20■□□□□ 10.1
Retrieved 100 of 15,879 protein–RNA pairs in 81.8 ms