RNA–Protein interactions for RNA: ENST00000359429.10

RPE-202, Transcript of ribulose-5-phosphate-3-epimerase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RPE, Length 2,569 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPE-202ENST00000359429 NISCHQ9Y2I1 1504 aa21.66■■□□□ 1.06
RPE-202ENST00000359429 AEBP2Q6ZN18 517 aaPredicted RBP21.36■■□□□ 1.01
RPE-202ENST00000359429 CHIC1Q5VXU3 224 aa20.24■□□□□ 0.83
RPE-202ENST00000359429 SHROOM4Q9ULL8 1493 aa18.89■□□□□ 0.61
RPE-202ENST00000359429 SUPT5HO00267 1087 aaKnown RBP18.67■□□□□ 0.58
RPE-202ENST00000359429 ZCCHC6Q5VYS8 1495 aaKnown RBP18.38■□□□□ 0.53
RPE-202ENST00000359429 MYO15BQ96JP2 1530 aa18.32■□□□□ 0.52
RPE-202ENST00000359429 HRCP23327 699 aa18.26■□□□□ 0.51
RPE-202ENST00000359429 CCDC180Q9P1Z9 1646 aa18.14■□□□□ 0.49
RPE-202ENST00000359429 PCGF6Q9BYE7 350 aa18.08■□□□□ 0.48
RPE-202ENST00000359429 SENP3Q9H4L4 574 aaPredicted RBP18.06■□□□□ 0.48
RPE-202ENST00000359429 DCAF8L2P0C7V8 631 aa18.04■□□□□ 0.48
RPE-202ENST00000359429 PPARGC1BQ86YN6 1023 aaKnown RBP17.95■□□□□ 0.46
RPE-202ENST00000359429 PHF23Q9BUL5 403 aaPredicted RBP17.91■□□□□ 0.46
RPE-202ENST00000359429 LOC105371045A0A1W2PR82 267 aa17.83■□□□□ 0.44
RPE-202ENST00000359429 DCAF1Q9Y4B6 1507 aa17.77■□□□□ 0.44
RPE-202ENST00000359429 TRIM26Q12899 539 aaPredicted RBP17.57■□□□□ 0.4
RPE-202ENST00000359429 ABCC9O60706 1549 aa17.38■□□□□ 0.37
RPE-202ENST00000359429 RSF1Q96T23 1441 aaPredicted RBP17.33■□□□□ 0.36
RPE-202ENST00000359429 TRIM41Q8WV44 630 aa17.29■□□□□ 0.36
RPE-202ENST00000359429 FAM9AQ8IZU1 332 aaPredicted RBP17.27■□□□□ 0.35
RPE-202ENST00000359429 ZEB1P37275 1124 aaPredicted RBP17.25■□□□□ 0.35
RPE-202ENST00000359429 SCRIBQ14160 1630 aa17.2■□□□□ 0.34
RPE-202ENST00000359429 RB1CC1Q8TDY2 1594 aa17.18■□□□□ 0.34
RPE-202ENST00000359429 EHMT2Q96KQ7 1210 aa17.18■□□□□ 0.34
RPE-202ENST00000359429 SCAF1Q9H7N4 1312 aaKnown RBP17.09■□□□□ 0.33
RPE-202ENST00000359429 CECR2Q9BXF3 1484 aa16.98■□□□□ 0.31
RPE-202ENST00000359429 FOXD1Q16676 465 aa16.93■□□□□ 0.3
RPE-202ENST00000359429 PELP1Q8IZL8 1130 aaKnown RBP16.92■□□□□ 0.3
RPE-202ENST00000359429 MROH2BQ7Z745 1585 aa16.92■□□□□ 0.3
RPE-202ENST00000359429 NACADO15069 1562 aa16.91■□□□□ 0.3
RPE-202ENST00000359429 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.89■□□□□ 0.3
RPE-202ENST00000359429 WIZO95785 1651 aa16.82■□□□□ 0.28
RPE-202ENST00000359429 CCER1Q8TC90 406 aaPredicted RBP16.8■□□□□ 0.28
RPE-202ENST00000359429 NEUROD1Q13562 356 aa16.76■□□□□ 0.27
RPE-202ENST00000359429 ACIN1Q9UKV3 1341 aaKnown RBP16.75■□□□□ 0.27
RPE-202ENST00000359429 EIF4G1Q04637 1599 aaKnown RBP16.7■□□□□ 0.26
RPE-202ENST00000359429 TTBK1Q5TCY1 1321 aaPredicted RBP16.69■□□□□ 0.26
RPE-202ENST00000359429 BAZ1AQ9NRL2 1556 aaPredicted RBP16.67■□□□□ 0.26
RPE-202ENST00000359429 DIEXFQ68CQ4 756 aaKnown RBP16.66■□□□□ 0.26
RPE-202ENST00000359429 CCDC88BA6NC98 1476 aa16.62■□□□□ 0.25
RPE-202ENST00000359429 ABCC8Q09428 1581 aa16.61■□□□□ 0.25
RPE-202ENST00000359429 GTF3C3Q9Y5Q9 886 aa16.6■□□□□ 0.25
RPE-202ENST00000359429 WRNQ14191 1432 aaPredicted RBP eCLIP16.6■□□□□ 0.25
RPE-202ENST00000359429 CEP162Q5TB80 1403 aa16.57■□□□□ 0.24
RPE-202ENST00000359429 SOGA1O94964 1423 aa16.55■□□□□ 0.24
RPE-202ENST00000359429 CENPBP07199 599 aaPredicted RBP16.52■□□□□ 0.23
RPE-202ENST00000359429 TNIKQ9UKE5 1360 aa16.49■□□□□ 0.23
RPE-202ENST00000359429 TOP2AP11388 1531 aaKnown RBP16.49■□□□□ 0.23
RPE-202ENST00000359429 RUSC2Q8N2Y8 1516 aa16.47■□□□□ 0.23
RPE-202ENST00000359429 SMARCA2P51531 1590 aa16.45■□□□□ 0.22
RPE-202ENST00000359429 CSRNP3Q8WYN3 585 aa16.44■□□□□ 0.22
RPE-202ENST00000359429 ZNF316A6NFI3 1004 aaPredicted RBP16.43■□□□□ 0.22
RPE-202ENST00000359429 UBTFP17480 764 aaKnown RBP16.43■□□□□ 0.22
RPE-202ENST00000359429 SMARCA4P51532 1647 aa16.4■□□□□ 0.22
RPE-202ENST00000359429 UNC13AQ9UPW8 1703 aa16.4■□□□□ 0.22
RPE-202ENST00000359429 YTHDC1Q96MU7 727 aaKnown RBP16.35■□□□□ 0.21
RPE-202ENST00000359429 EEA1Q15075 1411 aa16.35■□□□□ 0.21
RPE-202ENST00000359429 HNRNPUL2Q1KMD3 747 aaKnown RBP16.32■□□□□ 0.2
RPE-202ENST00000359429 GOLGA3Q08378 1498 aa16.31■□□□□ 0.2
RPE-202ENST00000359429 MIER1Q8N108 512 aa16.31■□□□□ 0.2
RPE-202ENST00000359429 BICRAQ9NZM4 1560 aa16.25■□□□□ 0.19
RPE-202ENST00000359429 CLIP1P30622 1438 aa16.18■□□□□ 0.18
RPE-202ENST00000359429 CEP164Q9UPV0 1460 aa16.18■□□□□ 0.18
RPE-202ENST00000359429 PABPN1Q86U42 306 aaKnown RBP eCLIP16.17■□□□□ 0.18
RPE-202ENST00000359429 PLPPR3Q6T4P5 718 aa16.16■□□□□ 0.18
RPE-202ENST00000359429 SYNJ1O43426 1573 aa16.15■□□□□ 0.18
RPE-202ENST00000359429 VPS8Q8N3P4 1428 aa16.14■□□□□ 0.17
RPE-202ENST00000359429 KIF21BO75037 1637 aa16.12■□□□□ 0.17
RPE-202ENST00000359429 RANGAP1P46060 587 aaPredicted RBP16.12■□□□□ 0.17
RPE-202ENST00000359429 MYT1Q01538 1121 aa16.1■□□□□ 0.17
RPE-202ENST00000359429 RAPGEF2Q9Y4G8 1499 aa16.1■□□□□ 0.17
RPE-202ENST00000359429 APLP2Q06481 763 aa16.07■□□□□ 0.16
RPE-202ENST00000359429 BAZ1BQ9UIG0 1483 aaKnown RBP16.03■□□□□ 0.16
RPE-202ENST00000359429 PEG3Q9GZU2 1588 aa16.03■□□□□ 0.16
RPE-202ENST00000359429 DHX57Q6P158 1386 aaKnown RBP15.99■□□□□ 0.15
RPE-202ENST00000359429 KANK4Q5T7N3 995 aaPredicted RBP15.95■□□□□ 0.14
RPE-202ENST00000359429 PPP6R1Q9UPN7 881 aa15.95■□□□□ 0.14
RPE-202ENST00000359429 ATAD2BQ9ULI0 1458 aa15.95■□□□□ 0.14
RPE-202ENST00000359429 CLSPNQ9HAW4 1339 aa15.93■□□□□ 0.14
RPE-202ENST00000359429 SUPT16HQ9Y5B9 1047 aaKnown RBP15.9■□□□□ 0.14
RPE-202ENST00000359429 ARAP1Q96P48 1450 aa15.9■□□□□ 0.14
RPE-202ENST00000359429 ADRA2BP18089 450 aa15.87■□□□□ 0.13
RPE-202ENST00000359429 TOP2BQ02880 1626 aa15.86■□□□□ 0.13
RPE-202ENST00000359429 PRXQ9BXM0 1461 aa15.86■□□□□ 0.13
RPE-202ENST00000359429 RRBP1Q9P2E9 1410 aaKnown RBP15.82■□□□□ 0.12
RPE-202ENST00000359429 ERICH3Q5RHP9 1530 aa15.81■□□□□ 0.12
RPE-202ENST00000359429 PIAS4Q8N2W9 510 aaPredicted RBP15.8■□□□□ 0.12
RPE-202ENST00000359429 KCNH8Q96L42 1107 aa15.79■□□□□ 0.12
RPE-202ENST00000359429 BIVM-ERCC5R4GMW8 1640 aa15.77■□□□□ 0.11
RPE-202ENST00000359429 ITGAEP38570 1179 aa15.77■□□□□ 0.11
RPE-202ENST00000359429 CUX2O14529 1486 aa15.75■□□□□ 0.11
RPE-202ENST00000359429 CCNB3Q8WWL7 1395 aa15.75■□□□□ 0.11
RPE-202ENST00000359429 TSHZ2Q9NRE2 1034 aa15.74■□□□□ 0.11
RPE-202ENST00000359429 ARHGAP35Q9NRY4 1499 aa15.71■□□□□ 0.11
RPE-202ENST00000359429 CUX1P39880 1505 aa15.7■□□□□ 0.1
RPE-202ENST00000359429 MSH5O43196 834 aa15.68■□□□□ 0.1
RPE-202ENST00000359429 RAB3GAP2Q9H2M9 1393 aa15.68■□□□□ 0.1
RPE-202ENST00000359429 KIF27Q86VH2 1401 aa15.68■□□□□ 0.1
RPE-202ENST00000359429 MAPKBP1O60336 1514 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms