RNA–Protein interactions for RNA: ENST00000354506.10

RPE-201, Transcript of ribulose-5-phosphate-3-epimerase, humanhuman

TSL 2 BASIC

Gene RPE, Length 3,165 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPE-201ENST00000354506 NISCHQ9Y2I1 1504 aa19.91■□□□□ 0.78
RPE-201ENST00000354506 CCDC180Q9P1Z9 1646 aa16.94■□□□□ 0.3
RPE-201ENST00000354506 ZCCHC6Q5VYS8 1495 aaKnown RBP16.87■□□□□ 0.29
RPE-201ENST00000354506 SHROOM4Q9ULL8 1493 aa16.8■□□□□ 0.28
RPE-201ENST00000354506 SUPT5HO00267 1087 aaKnown RBP16.61■□□□□ 0.25
RPE-201ENST00000354506 DCAF1Q9Y4B6 1507 aa16.43■□□□□ 0.22
RPE-201ENST00000354506 DCAF8L2P0C7V8 631 aa16.26■□□□□ 0.19
RPE-201ENST00000354506 CHIC1Q5VXU3 224 aa16.22■□□□□ 0.19
RPE-201ENST00000354506 MYO15BQ96JP2 1530 aa16.22■□□□□ 0.19
RPE-201ENST00000354506 PCGF6Q9BYE7 350 aa16.03■□□□□ 0.16
RPE-201ENST00000354506 PPARGC1BQ86YN6 1023 aaKnown RBP16■□□□□ 0.15
RPE-201ENST00000354506 ABCC9O60706 1549 aa15.92■□□□□ 0.14
RPE-201ENST00000354506 HRCP23327 699 aa15.85■□□□□ 0.13
RPE-201ENST00000354506 LOC105371045A0A1W2PR82 267 aa15.8■□□□□ 0.12
RPE-201ENST00000354506 RSF1Q96T23 1441 aaPredicted RBP15.76■□□□□ 0.11
RPE-201ENST00000354506 EHMT2Q96KQ7 1210 aa15.73■□□□□ 0.11
RPE-201ENST00000354506 SCRIBQ14160 1630 aa15.73■□□□□ 0.11
RPE-201ENST00000354506 RB1CC1Q8TDY2 1594 aa15.63■□□□□ 0.09
RPE-201ENST00000354506 NACADO15069 1562 aa15.6■□□□□ 0.09
RPE-201ENST00000354506 FAM9AQ8IZU1 332 aaPredicted RBP15.5■□□□□ 0.07
RPE-201ENST00000354506 CECR2Q9BXF3 1484 aa15.47■□□□□ 0.07
RPE-201ENST00000354506 TRIM26Q12899 539 aaPredicted RBP15.46■□□□□ 0.07
RPE-201ENST00000354506 MROH2BQ7Z745 1585 aa15.45■□□□□ 0.06
RPE-201ENST00000354506 TRIM41Q8WV44 630 aa15.4■□□□□ 0.06
RPE-201ENST00000354506 WIZO95785 1651 aa15.37■□□□□ 0.05
RPE-201ENST00000354506 EIF4G1Q04637 1599 aaKnown RBP15.32■□□□□ 0.04
RPE-201ENST00000354506 BAZ1AQ9NRL2 1556 aaPredicted RBP15.31■□□□□ 0.04
RPE-201ENST00000354506 TTBK1Q5TCY1 1321 aaPredicted RBP15.22■□□□□ 0.03
RPE-201ENST00000354506 ZEB1P37275 1124 aaPredicted RBP15.16■□□□□ 0.02
RPE-201ENST00000354506 TOP2AP11388 1531 aaKnown RBP15.15■□□□□ 0.02
RPE-201ENST00000354506 UNC13AQ9UPW8 1703 aa15.14■□□□□ 0.01
RPE-201ENST00000354506 SMARCA4P51532 1647 aa15.13■□□□□ 0.01
RPE-201ENST00000354506 SMARCA2P51531 1590 aa15.08■□□□□ 0
RPE-201ENST00000354506 CCDC88BA6NC98 1476 aa15.07■□□□□ 0
RPE-201ENST00000354506 SCAF1Q9H7N4 1312 aaKnown RBP15□□□□□ -0.01
RPE-201ENST00000354506 ABCC8Q09428 1581 aa15□□□□□ -0.01
RPE-201ENST00000354506 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.99□□□□□ -0.01
RPE-201ENST00000354506 WRNQ14191 1432 aaPredicted RBP eCLIP14.96□□□□□ -0.01
RPE-201ENST00000354506 PEG3Q9GZU2 1588 aa14.94□□□□□ -0.02
RPE-201ENST00000354506 BICRAQ9NZM4 1560 aa14.94□□□□□ -0.02
RPE-201ENST00000354506 SOGA1O94964 1423 aa14.89□□□□□ -0.03
RPE-201ENST00000354506 EEA1Q15075 1411 aa14.87□□□□□ -0.03
RPE-201ENST00000354506 TNIKQ9UKE5 1360 aa14.87□□□□□ -0.03
RPE-201ENST00000354506 CCER1Q8TC90 406 aaPredicted RBP14.85□□□□□ -0.03
RPE-201ENST00000354506 CEP162Q5TB80 1403 aa14.84□□□□□ -0.03
RPE-201ENST00000354506 RUSC2Q8N2Y8 1516 aa14.82□□□□□ -0.04
RPE-201ENST00000354506 CSRNP3Q8WYN3 585 aa14.78□□□□□ -0.04
RPE-201ENST00000354506 NEUROD1Q13562 356 aa14.74□□□□□ -0.05
RPE-201ENST00000354506 GOLGA3Q08378 1498 aa14.73□□□□□ -0.05
RPE-201ENST00000354506 SYNJ1O43426 1573 aa14.72□□□□□ -0.05
RPE-201ENST00000354506 YTHDC1Q96MU7 727 aaKnown RBP14.72□□□□□ -0.05
RPE-201ENST00000354506 ATAD2BQ9ULI0 1458 aa14.71□□□□□ -0.05
RPE-201ENST00000354506 PABPN1Q86U42 306 aaKnown RBP eCLIP14.71□□□□□ -0.06
RPE-201ENST00000354506 KIF21BO75037 1637 aa14.7□□□□□ -0.06
RPE-201ENST00000354506 RANGAP1P46060 587 aaPredicted RBP14.66□□□□□ -0.06
RPE-201ENST00000354506 GTF3C3Q9Y5Q9 886 aa14.65□□□□□ -0.06
RPE-201ENST00000354506 CEP164Q9UPV0 1460 aa14.65□□□□□ -0.06
RPE-201ENST00000354506 DIEXFQ68CQ4 756 aaKnown RBP14.62□□□□□ -0.07
RPE-201ENST00000354506 BAZ1BQ9UIG0 1483 aaKnown RBP14.61□□□□□ -0.07
RPE-201ENST00000354506 UBTFP17480 764 aaKnown RBP14.6□□□□□ -0.07
RPE-201ENST00000354506 ACIN1Q9UKV3 1341 aaKnown RBP14.6□□□□□ -0.07
RPE-201ENST00000354506 AEBP2Q6ZN18 517 aaPredicted RBP14.58□□□□□ -0.08
RPE-201ENST00000354506 TOP2BQ02880 1626 aa14.57□□□□□ -0.08
RPE-201ENST00000354506 BIVM-ERCC5R4GMW8 1640 aa14.54□□□□□ -0.08
RPE-201ENST00000354506 RAPGEF2Q9Y4G8 1499 aa14.53□□□□□ -0.08
RPE-201ENST00000354506 VPS8Q8N3P4 1428 aa14.53□□□□□ -0.08
RPE-201ENST00000354506 CLIP1P30622 1438 aa14.52□□□□□ -0.08
RPE-201ENST00000354506 HNRNPUL2Q1KMD3 747 aaKnown RBP14.52□□□□□ -0.08
RPE-201ENST00000354506 PELP1Q8IZL8 1130 aaKnown RBP14.51□□□□□ -0.09
RPE-201ENST00000354506 PRXQ9BXM0 1461 aa14.45□□□□□ -0.1
RPE-201ENST00000354506 HMGXB3Q12766 1538 aa14.45□□□□□ -0.1
RPE-201ENST00000354506 ERICH3Q5RHP9 1530 aa14.45□□□□□ -0.1
RPE-201ENST00000354506 NCAPD3P42695 1498 aa14.44□□□□□ -0.1
RPE-201ENST00000354506 CENPBP07199 599 aaPredicted RBP14.42□□□□□ -0.1
RPE-201ENST00000354506 ZNF316A6NFI3 1004 aaPredicted RBP14.41□□□□□ -0.1
RPE-201ENST00000354506 CUX1P39880 1505 aa14.38□□□□□ -0.11
RPE-201ENST00000354506 ARAP1Q96P48 1450 aa14.37□□□□□ -0.11
RPE-201ENST00000354506 MIER1Q8N108 512 aa14.35□□□□□ -0.11
RPE-201ENST00000354506 CFTRP13569 1480 aa14.34□□□□□ -0.11
RPE-201ENST00000354506 PRDM2Q13029 1718 aa14.29□□□□□ -0.12
RPE-201ENST00000354506 KIF27Q86VH2 1401 aa14.27□□□□□ -0.13
RPE-201ENST00000354506 CLSPNQ9HAW4 1339 aa14.27□□□□□ -0.13
RPE-201ENST00000354506 APLP2Q06481 763 aa14.26□□□□□ -0.13
RPE-201ENST00000354506 RRBP1Q9P2E9 1410 aaKnown RBP14.26□□□□□ -0.13
RPE-201ENST00000354506 CUX2O14529 1486 aa14.24□□□□□ -0.13
RPE-201ENST00000354506 DHX57Q6P158 1386 aaKnown RBP14.23□□□□□ -0.13
RPE-201ENST00000354506 KANK4Q5T7N3 995 aaPredicted RBP14.23□□□□□ -0.13
RPE-201ENST00000354506 ARHGAP35Q9NRY4 1499 aa14.22□□□□□ -0.13
RPE-201ENST00000354506 ITGAEP38570 1179 aa14.18□□□□□ -0.14
RPE-201ENST00000354506 IGF1RP08069 1367 aa14.17□□□□□ -0.14
RPE-201ENST00000354506 MAP3K1Q13233 1512 aa14.16□□□□□ -0.14
RPE-201ENST00000354506 CADPSQ9ULU8 1353 aa14.11□□□□□ -0.15
RPE-201ENST00000354506 CCNB3Q8WWL7 1395 aa14.11□□□□□ -0.15
RPE-201ENST00000354506 TIAM1Q13009 1591 aa14.08□□□□□ -0.16
RPE-201ENST00000354506 FGD5Q6ZNL6 1462 aa14.06□□□□□ -0.16
RPE-201ENST00000354506 CARMIL1Q5VZK9 1371 aa14.05□□□□□ -0.16
RPE-201ENST00000354506 BCANQ96GW7 911 aa14.04□□□□□ -0.16
RPE-201ENST00000354506 MAPKBP1O60336 1514 aa14.02□□□□□ -0.16
RPE-201ENST00000354506 LRRC9Q6ZRR7 1453 aa14.02□□□□□ -0.16
RPE-201ENST00000354506 KCNH8Q96L42 1107 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 118.7 ms