Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 VN2R19P-201ENST00000442399 1052 ntBASIC5.37□□□□□ -1.55
SYNE1Q8NF91 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 RPS8P6-201ENST00000426177 609 ntBASIC5.37□□□□□ -1.55
SYNE1Q8NF91 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 KCNMA1-227ENST00000638203 3840 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 AC083906.6-201ENST00000641366 219 ntBASIC5.37□□□□□ -1.55
SYNE1Q8NF91 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 DNAJB3-201ENST00000446806 729 ntBASIC5.37□□□□□ -1.55
SYNE1Q8NF91 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 ANKRD20A8P-203ENST00000641373 517 ntBASIC5.37□□□□□ -1.55
SYNE1Q8NF91 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 STXBP1-202ENST00000373302 3967 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 65.9 ms